Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01117 ATGAAGAAATTCCAAGTGAAATTAGACAATTTGAAGCTTTATGGATATCACAAAGAGAATGAAAGAATCGCCATTGAAATCAAATGGAAAGGTCCTCAAAGACATTCCCTTTTATCCGTTCCATTTTATGCAAAATCCCCTCTCCAAATTAACCGCACCACCGCCCAGCTAGTTCTTAACAATCATCATCAATGGAATCATGAGTTCCACAGCATTTGTGAATTCGAACTCCCCCATCATGATGATCCTTCTTCCATTCCCTTCTGGGATACCAAATTCTACGTCTTACTCGAAGAATACACAAAATCCAAGACGAAAACTTCTGTTTTGGGCAAGGCGTCGCTTAATTTAGCAGAGATGCTTTTGGCAATGGAGACGAAAATGGAGCGAAATGTTCCTATTACGTTGAAGGATTCTGCAGGAGCGGCTCCTCATCATGCTACGATTTCTGTATGTGTAAATTTTGTGGAGATCAGAGATGGGTCGGACATGATTCATCAGCAAGACAAGGAGGGATTTTTGAAAGCGTTGAAAGGTTTAACGAACTTCAAGAAGAAGAACAGGGAAAAGGGTAAAGTGATTTCATCGGACGGTGAAAACAGGGGTTTGGGAAATTCAACGATAGGGGAGGAAGATGGAGATCAAAAGCTGGGGAAATTGTTGTCTAAGAAGAGACGGCTGAGTTTTAGTTTTAGACATTCGAAAGGGAAAGTGGAGCCGTGGTTGGAGAAGACGAACACGGCGGTCAACGACGGAGTTACCGTTGACCAACCGGAACACGACAATGATCCTTCCATGTTGAAAGTCGTCCCCATTTCAACTTCTCAAAAGGAGAAAGCAGAAAGCAGAGGGTTTTCTTTAGAAACAGATGGTCAAAACAAAGAAACTAGCGGAGGGAAATGGGAAACTAGAGAAATAATAAGCAGAGATGGCAAGACGAAGCTGAAAACAGAGGTGTTCTTTGGCTCGTTTGACCAGCGGAGCGAGAAGGCTGGAGGCGAGAGTGCCTGCACGGCTATAGTTGCCGTGATCACCCACTGGCTGCATTCGAACTATGGCACGATGCCCACACAACCGGAGCTAGACAACCTCATAATGGAAGGTTCATCAGAATGGCAAAAGCTTTGCAACAATGTCTGCTACTCCAACTACTTCCCAAACAAACATTTTGACCTTGAGACCATCGTGCAAGCCGACGTCCGACCGATCGCCGTCTCCGCTGAAAATTCCTTTGTAGGCTTCTTCAGCCCAGAGAAATTCAACTGCTTGACAGAAGCAATGTCGTTCGAGCAAATATGGAATGAGGTCAATGCCAAAACATGTTCAACTTACGAGTCAAGAATTTATATTGTGAGTTGGAACGATCACTTCTTCGTGATGAAGATGGAAGAAGATGCATGTTACATCATTGATTCATTAGGTGAACGTTTGTTTGAGGGGTGTAATCAAGCTTACATCTTGAAGTTCGATAACTCGAGTTTGATGTTTGAGAACCAAGAGAAAGGAGAACCTGGGGAATTGGTTTGCAGGGGAAAAGAGTGTTGCAGAGAGTTTTTTGAAAGGTTTCTTGCAGCCATAACGATTGAAGAGCTGGAAGAAGAACAAAAGAAGTTGAGTGATTCTAATTTTATACCCCATCAGAGGTTACAAATTGACTTCCATTTTAGCAGCCCTGTTGCTTCATCCTCATCAACTTCCCCATGCTCTCTTTTCTCTGATCGAAGCCCTGCATAA 1734 43.31 MKKFQVKLDNLKLYGYHKENERIAIEIKWKGPQRHSLLSVPFYAKSPLQINRTTAQLVLNNHHQWNHEFHSICEFELPHHDDPSSIPFWDTKFYVLLEEYTKSKTKTSVLGKASLNLAEMLLAMETKMERNVPITLKDSAGAAPHHATISVCVNFVEIRDGSDMIHQQDKEGFLKALKGLTNFKKKNREKGKVISSDGENRGLGNSTIGEEDGDQKLGKLLSKKRRLSFSFRHSKGKVEPWLEKTNTAVNDGVTVDQPEHDNDPSMLKVVPISTSQKEKAESRGFSLETDGQNKETSGGKWETREIISRDGKTKLKTEVFFGSFDQRSEKAGGESACTAIVAVITHWLHSNYGTMPTQPELDNLIMEGSSEWQKLCNNVCYSNYFPNKHFDLETIVQADVRPIAVSAENSFVGFFSPEKFNCLTEAMSFEQIWNEVNAKTCSTYESRIYIVSWNDHFFVMKMEEDACYIIDSLGERLFEGCNQAYILKFDNSSLMFENQEKGEPGELVCRGKECCREFFERFLAAITIEELEEEQKKLSDSNFIPHQRLQIDFHFSSPVASSSSTSPCSLFSDRSPA* 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14485464 14487556 - Chy3G060970.1 Chy03g01117 223278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01117 577 ProSiteProfiles C2 NT-type domain profile. 1 153 IPR019448 -
Chy03g01117 577 PANTHER - 1 570 - -
Chy03g01117 577 MobiDBLite consensus disorder prediction 558 577 - -
Chy03g01117 577 MobiDBLite consensus disorder prediction 275 301 - -
Chy03g01117 577 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 13 160 IPR019448 -
Chy03g01117 577 MobiDBLite consensus disorder prediction 275 294 - -
Chy03g01117 577 MobiDBLite consensus disorder prediction 191 214 - -
Chy03g01117 577 PANTHER EEIG1/EHBP1 PROTEIN AMINO-TERMINAL DOMAIN PROTEIN 1 570 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01117 - - - csv:101207652 1090.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01117 Chy-Chr3:14485464 Chy04g01842 Chy-Chr4:24628905 6.16E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g486 . . . . . . . . Cmo05g00382 . . Cma05g00381 . . Sed03g1613 . . Bhi04g00946 Tan02g2726 Cmetu03g0210 . Hepe10g0247 . Lcy13g1793 . . . . . . . . . . . . . . Cme03g01613 Blo17g00020 . . Bda13g01261 . . . . . . . . . . Car05g00324 Cpe11g00326 . . . . . . . . Cla08g01337 Cam08g1799 Cec08g1378 Cco08g1506 Clacu08g1493 . Cre08g1280 Lsi08g01208 . Chy03g01117 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013221 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01117 Chy_Chr03 FPKM 16.650278 20.119425 26.510149 27.949997 23.548983 21.591282 22.592049 42.438801 41.632679 41.85429