Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01118 ATGGGAACGAGAGGGTTTCGTGGTTATTTGCTGCTCATTGTATGGGTGTCTCTTATTCTTCTTCTTCTGCGGTTTAGACCTTGCGCCGCTGGTTTTCAGAGCGTTGGGCAGATTTCTCCTGGGCTTCAAGGAACTCAAATGAATTGGGTCGATCACGATGGGGTGTTTCTTCGATCTAATAACTCTGAATTTGGGTTTGGATTCACTAATCAAAAGGATGTAACGCAGTATTATTTAGCGATTATTCACTTGAGTAGCAGGAGTATTGTCTGGACTGCGAATCAGGCCTCGCCGGTTACGACTTCGGATAAATTTTTGTTTGATGAGAACGGTAATGTGGTTTTATATCATGAGAGCATTGTGGTTTGGTCTACGAACACTGCGAATAAAGGAGTTTCTGCTCTTGCGTTGAGGGATTCGGGAAATTTGGTTTTGTTTAGGAGTGATAATGCAGTGATTTGGGAAAGTTTTGGCCATCCGACTGATACACTTTTGTCGAATCAAGGTTTTGTTGAGGGAATGAGACTTGTAAGTAAGCCTGATTCCAATAATTTGACGTATTTTCTGGAATTGAAATCTGGGGATATGGTTTTGTATTCAGGATTCAAAACTCCACAACCGTATTGGTCAATGAGTAGAGAGAATCGCAAAACGATTAACAAAGATGGTGGGTCTGTAATCTCTGCAACTCTAACAGCAAACTCGTGGAATTTCCATGGCGAAAATGATGTTTTACTCTGGCAATTTTCTTTCTCAACTAATACTGATTCAAACGCTACATGGACTGCGGTTCTGGGTAACGATGGATTTATCTCCTTTTACAAGCTTCAAGATGGTGGGTCTGGAGATGCTTCGTCCATTCGAATTCCTGATGATCCTTGTGGAACACCAGAGCCATGTGGGGCCAATTTTATCTGTTACAGTGAAAAAAAATGCCTCTGTCCTTCAATTCTTGGCTCCCGTCCAAATTGCCAAACTGGGATTACCTCGCCGTGTGACCAATCTGCTGGACCTGTAGAGCTTGTGGAGTCTCAGGATAAGATTGGTTATTTTGCACTTCAATTCATGCAGCCCTCTTTGAAAACAGATTTGGAGAATTGCAAATCCTCTTGCAGTAGTAACTGTTCTTGTATTGCTCTGTTTTTCCAAGCGAGTACAGGGGGTTGTTTCTTGTTTGATGAGATAGGTGGGTTTCTAAATTCGAAGAATTCCGAATTCGTTTCGTACATAAAACTGTTGAAAAACGGAGAAAACGGTGAAAACAATGGAGGAAATGGAAGTGGTGGAAAGAACTCAATCCCTGCGATTCTGGGTATTGCCTTTTCCACTATGATTGTCATTTGTGTTCTGATTTACGTCGGAATTCGATTCCTTAGAAAGAAGAAGAAACCTCCAGAGCCTTTTCAAGAAAGTTCAGAAGAAGAGAATTTCTTAGAGGGTCTTTCGGGAGCTCCAATTCGTTACAGAAGAATGAAGGCCATCCTCGACGCTAAGTTGAACATAAAGGAAAACGACGAGAGGATCATCATAGCCATTAAGGTGGCGCTGTGGTGCGTGCAGGAGGATATGCAACAAAGGCCGCCGATGGCTAAAGTGGTGCAAATGCTTGAAGGGGTCTGTCCTGTGCCAGTGCCGCCGATTTGCTCGCTGTTGGGTTCTCGACTGGTTGCTGCAGGGTTCTTGAAATCTAGCAGCGAGGAATGGACTTCATCAGGGCCATCCGATTGCAATAGCGATGCGTATCTTTCATCGGTCCAGTTATCTGGGCCAAGATAG 1776 43.47 MGTRGFRGYLLLIVWVSLILLLLRFRPCAAGFQSVGQISPGLQGTQMNWVDHDGVFLRSNNSEFGFGFTNQKDVTQYYLAIIHLSSRSIVWTANQASPVTTSDKFLFDENGNVVLYHESIVVWSTNTANKGVSALALRDSGNLVLFRSDNAVIWESFGHPTDTLLSNQGFVEGMRLVSKPDSNNLTYFLELKSGDMVLYSGFKTPQPYWSMSRENRKTINKDGGSVISATLTANSWNFHGENDVLLWQFSFSTNTDSNATWTAVLGNDGFISFYKLQDGGSGDASSIRIPDDPCGTPEPCGANFICYSEKKCLCPSILGSRPNCQTGITSPCDQSAGPVELVESQDKIGYFALQFMQPSLKTDLENCKSSCSSNCSCIALFFQASTGGCFLFDEIGGFLNSKNSEFVSYIKLLKNGENGENNGGNGSGGKNSIPAILGIAFSTMIVICVLIYVGIRFLRKKKKPPEPFQESSEEENFLEGLSGAPIRYRRMKAILDAKLNIKENDERIIIAIKVALWCVQEDMQQRPPMAKVVQMLEGVCPVPVPPICSLLGSRLVAAGFLKSSSEEWTSSGPSDCNSDAYLSSVQLSGPR* 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14493428 14495899 + Chy3G060980.1 Chy03g01118 223279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01118 591 MobiDBLite consensus disorder prediction 568 591 - -
Chy03g01118 591 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 491 591 - -
Chy03g01118 591 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 491 591 - -
Chy03g01118 591 Pfam D-mannose binding lectin 89 168 IPR001480 -
Chy03g01118 591 SUPERFAMILY alpha-D-mannose-specific plant lectins 85 212 IPR036426 -
Chy03g01118 591 Gene3D Transferase(Phosphotransferase) domain 1 446 541 - -
Chy03g01118 591 Gene3D - 47 159 IPR036426 -
Chy03g01118 591 SMART blect_4 48 160 IPR001480 -
Chy03g01118 591 ProSiteProfiles Bulb-type lectin domain profile. 42 158 IPR001480 -
Chy03g01118 591 CDD B_lectin 53 160 IPR001480 -
Chy03g01118 591 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 14 489 - -
Chy03g01118 591 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 14 489 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01118 - - - csv:101216153 908.286
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy03g01118 Chy04g00367 CCT
Chy03g01118 Chy04g00367 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01118 Chy-Chr3:14493428 Chy07g00993 Chy-Chr7:14616259 8.21E-27 dispersed
Chy07g00663 Chy-Chr7:6374855 Chy03g01118 Chy-Chr3:14493428 1.61E-21 dispersed
Chy03g01118 Chy-Chr3:14493428 Chy04g00367 Chy-Chr4:3253166 0 wgd
Chy03g01118 Chy-Chr3:14493428 Chy07g01606 Chy-Chr7:20204685 2.25E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g485 Blo01g01390 . Bda01g00747 . Bpe02g01248 Bpe02g00561 . . . Cmo12g00289 . . Car09g00401 Car12g00321 . Cpe07g00298 Cpe06g00340 Bhi04g00947 . . . . . Lcy13g1792 Cla05g01737 . . . . . . Cone4ag1783 Cone7ag1698 . . Lsi04g02129 Csa03g04335 Chy04g00367 Cme03g01614 . Blo18g00024 Bda01g01002 Bda13g01262 Bpe14g00581 . Bma01g01276 Bma02g00024 . . Cmo09g00467 Cma09g00458 Cma12g00340 . . . . Bhi09g02238 . . . . Mch11g0555 . Cla08g01336 . . . . . . Lsi08g01207 . Chy03g01118 Cme04g00409
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001479 3 3 3 4 3 2 2 2 2 2 2 2 2 2 1 2 2 7 2 2 2 2 2 2 1 2 1 2 2 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01118 Chy_Chr03 FPKM 0.0 12.843803 0.0 16.777231 0.0 16.099606 14.481475 16.486347 0.0 15.207092