Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01124 ATGGGAGAAACAAGAGACAACGAATATGAGGAGGAGCTCCTCGACTACGAGGAAGAAGAAGAGAAGGCCCCCGATTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGTTATGTCGGAATTCATAGTTCGGGATTCAGAGACTTCCTATTGAAGCCAGAGCTTCTCCGTGCTATTGTAGACTCTGGATTTGAGCATCCATCTGAAGTACAACATGAATGTATTCCCCAAGCTATCCTCGGCATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGTAAAACTGCTGTTTTTGTTCTGTCAACACTGCAGCAGATTGACCCTGTGGCTGGTCAAGTATCTGCCCTAGTTCTGTGCCATACTAGGGAGCTTGCATACCAGATCTGTCATGAGTTCGAAAGGTTCAGCACTTATCTTCCGGATCTGAAGGTTGCTGTCTTCTATGGTGGAGTGAATATTAAAATTCACAAAGATCTTCTGAAAAATGAATGTCCTCATATTGTTGTTGGAACACCCGGAAGGATATTGGCACTGTCAAGAGATAAAGACCTATCCCTGAAGAATGTCCGACATTTTATCTTGGATGAGTGTGACAAGATGCTTGAGTCACTTGATATGCGGAGGGATGTACAGGAGATCTTCAAGATGACTCCTCACGACAAACAAGTTATGATGTTTTCTGCAACACTTAGCAAAGAAATCCGCCCAGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATATATGTAGATGATGAGGCAAAGCTGACATTGCATGGTCTTGTCCAGCACTACATCAAATTGAGCGAGATGGAGAAAAATCGGAAGTTGAACGACCTTCTTGATGCATTGGACTTCAATCAAGTTGTTATTTTTGTCAAAAGTGTTAATAGGGCAGCGGAGCTAGATAAGTTATTGGTGGAGTGTAACTTTCCCTCTATATGCATCCACTCTGGCATGTCTCAGGAAGAGAGGTTGACTCGATACAAAGGTTTTAAGGAAGGACATAAGCGGATTCTTGTGGCTACAGATTTGGTTGGTCGAGGAATTGACATCGAACGTGTAAACATTGTTATCAATTATGACATGCCAGATTCTGCTGATACATATCTGCACAGGGTTGGCAGAGCTGGTAGATTTGGCACCAAAGGGCTTGCAATTACTTTTGTATCATCTGCAGCTGATTCTGATGTTCTCAATAATGTTCAAGAAAGGTTTGAAGTCGATATTAAGGAGCTTCCAGAGCAGATCGACACCTCCACTTACAGCCACTGCGCACTAGCTTTTGATGCGAGTGAGGGCGACGGTGGATGCTCTAAAATGTGGTGGTTTACTCTGCCATTTGAGTTTTATTGTATTCTAATTGCTGGGGCTGTCTTGCATTGGAAGTCTCTTTATGCATTTTATTCTGAATCACGAATGGTCTCTTAA 1437 42.8 MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYSHCALAFDASEGDGGCSKMWWFTLPFEFYCILIAGAVLHWKSLYAFYSESRMVS* 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14529662 14534535 + Chy3G061040.1 Chy03g01124 223285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01124 478 Pfam Helicase conserved C-terminal domain 276 383 IPR001650 -
Chy03g01124 478 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724
Chy03g01124 478 Coils Coil 471 478 - -
Chy03g01124 478 Gene3D - 259 427 IPR027417 -
Chy03g01124 478 Gene3D - 42 258 IPR027417 -
Chy03g01124 478 SMART ultradead3 65 266 IPR014001 -
Chy03g01124 478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 394 IPR027417 -
Chy03g01124 478 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 28 422 - -
Chy03g01124 478 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
Chy03g01124 478 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676|GO:0005524
Chy03g01124 478 MobiDBLite consensus disorder prediction 1 22 - -
Chy03g01124 478 CDD DEADc_DDX39 45 252 - -
Chy03g01124 478 CDD SF2_C_DEAD 263 392 - -
Chy03g01124 478 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 28 422 - -
Chy03g01124 478 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 278 423 IPR001650 -
Chy03g01124 478 MobiDBLite consensus disorder prediction 1 29 - -
Chy03g01124 478 SMART helicmild6 302 383 IPR001650 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01124 Chy-Chr3:14529662 Chy06g00183 Chy-Chr6:1190164 9.45E-78 dispersed
Chy03g01124 Chy-Chr3:14529662 Chy04g00666 Chy-Chr4:7687592 2.02E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01124 K12812 - csv:101217346 831.247