Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy03g01124 | ATGGGAGAAACAAGAGACAACGAATATGAGGAGGAGCTCCTCGACTACGAGGAAGAAGAAGAGAAGGCCCCCGATTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGTTATGTCGGAATTCATAGTTCGGGATTCAGAGACTTCCTATTGAAGCCAGAGCTTCTCCGTGCTATTGTAGACTCTGGATTTGAGCATCCATCTGAAGTACAACATGAATGTATTCCCCAAGCTATCCTCGGCATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGTAAAACTGCTGTTTTTGTTCTGTCAACACTGCAGCAGATTGACCCTGTGGCTGGTCAAGTATCTGCCCTAGTTCTGTGCCATACTAGGGAGCTTGCATACCAGATCTGTCATGAGTTCGAAAGGTTCAGCACTTATCTTCCGGATCTGAAGGTTGCTGTCTTCTATGGTGGAGTGAATATTAAAATTCACAAAGATCTTCTGAAAAATGAATGTCCTCATATTGTTGTTGGAACACCCGGAAGGATATTGGCACTGTCAAGAGATAAAGACCTATCCCTGAAGAATGTCCGACATTTTATCTTGGATGAGTGTGACAAGATGCTTGAGTCACTTGATATGCGGAGGGATGTACAGGAGATCTTCAAGATGACTCCTCACGACAAACAAGTTATGATGTTTTCTGCAACACTTAGCAAAGAAATCCGCCCAGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATATATGTAGATGATGAGGCAAAGCTGACATTGCATGGTCTTGTCCAGCACTACATCAAATTGAGCGAGATGGAGAAAAATCGGAAGTTGAACGACCTTCTTGATGCATTGGACTTCAATCAAGTTGTTATTTTTGTCAAAAGTGTTAATAGGGCAGCGGAGCTAGATAAGTTATTGGTGGAGTGTAACTTTCCCTCTATATGCATCCACTCTGGCATGTCTCAGGAAGAGAGGTTGACTCGATACAAAGGTTTTAAGGAAGGACATAAGCGGATTCTTGTGGCTACAGATTTGGTTGGTCGAGGAATTGACATCGAACGTGTAAACATTGTTATCAATTATGACATGCCAGATTCTGCTGATACATATCTGCACAGGGTTGGCAGAGCTGGTAGATTTGGCACCAAAGGGCTTGCAATTACTTTTGTATCATCTGCAGCTGATTCTGATGTTCTCAATAATGTTCAAGAAAGGTTTGAAGTCGATATTAAGGAGCTTCCAGAGCAGATCGACACCTCCACTTACAGCCACTGCGCACTAGCTTTTGATGCGAGTGAGGGCGACGGTGGATGCTCTAAAATGTGGTGGTTTACTCTGCCATTTGAGTTTTATTGTATTCTAATTGCTGGGGCTGTCTTGCATTGGAAGTCTCTTTATGCATTTTATTCTGAATCACGAATGGTCTCTTAA | 1437 | 42.8 | MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYSHCALAFDASEGDGGCSKMWWFTLPFEFYCILIAGAVLHWKSLYAFYSESRMVS* | 479 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 14529662 | 14534535 | + | Chy3G061040.1 | Chy03g01124 | 223285 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy03g01124 | 478 | Pfam | Helicase conserved C-terminal domain | 276 | 383 | IPR001650 | - | |
Chy03g01124 | 478 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 46 | 74 | IPR014014 | GO:0003724 | |
Chy03g01124 | 478 | Coils | Coil | 471 | 478 | - | - | |
Chy03g01124 | 478 | Gene3D | - | 259 | 427 | IPR027417 | - | |
Chy03g01124 | 478 | Gene3D | - | 42 | 258 | IPR027417 | - | |
Chy03g01124 | 478 | SMART | ultradead3 | 65 | 266 | IPR014001 | - | |
Chy03g01124 | 478 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 115 | 394 | IPR027417 | - | |
Chy03g01124 | 478 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 28 | 422 | - | - | |
Chy03g01124 | 478 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 77 | 250 | IPR014001 | - | |
Chy03g01124 | 478 | Pfam | DEAD/DEAH box helicase | 71 | 236 | IPR011545 | GO:0003676|GO:0005524 | |
Chy03g01124 | 478 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Chy03g01124 | 478 | CDD | DEADc_DDX39 | 45 | 252 | - | - | |
Chy03g01124 | 478 | CDD | SF2_C_DEAD | 263 | 392 | - | - | |
Chy03g01124 | 478 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE | 28 | 422 | - | - | |
Chy03g01124 | 478 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 278 | 423 | IPR001650 | - | |
Chy03g01124 | 478 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Chy03g01124 | 478 | SMART | helicmild6 | 302 | 383 | IPR001650 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy03g01124 | Chy-Chr3:14529662 | Chy06g00183 | Chy-Chr6:1190164 | 9.45E-78 | dispersed | |
Chy03g01124 | Chy-Chr3:14529662 | Chy04g00666 | Chy-Chr4:7687592 | 2.02E-74 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy03g01124 | K12812 | - | csv:101217346 | 831.247 |