Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01140 ATGAGTCGGCCGGGCGATTGGAATTGCAGGTCTTGCAACCATCTCAACTTTCAACGGAGAGATTCGTGTCAACGATGTGGAGACCCTAGGGCCGACTTCGGCGGCGGAAGAGTTGGTGGTTCTTCATCCTTCGGTTTCACCACGGGCCCCGACGTCCGACCTGGGGATTGGTACTGCACCGTCGCTAACTGTGGCGCTCATAACTTCGCAAGCCGCTCTATCTGTTTTAAGTGCGGCGCCACAAAGGATGAAACTTCCGCCGCCGCTTACGACGGCGATTTGCCCAGAATGAGAGGCTTTAACTTCGGCGGTGCCTCCAACCGTCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGATCGGATTGCAATGAGCACAACTTTGCCAGTCGAAGGGAATGCTTTAGATGCAATGCGCCAAGGGATTCCAACAGCAAGTCACCATACTCGTAA 453 54.3 MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGRVGGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGATKDETSAAAYDGDLPRMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS* 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14676999 14678075 - Chy3G061200.1 Chy03g01140 223301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01140 150 Pfam Zn-finger in Ran binding protein and others 3 29 IPR001876 -
Chy03g01140 150 Pfam Zn-finger in Ran binding protein and others 112 141 IPR001876 -
Chy03g01140 150 Pfam Zn-finger in Ran binding protein and others 53 82 IPR001876 -
Chy03g01140 150 SUPERFAMILY Ran binding protein zinc finger-like 2 31 IPR036443 -
Chy03g01140 150 SUPERFAMILY Ran binding protein zinc finger-like 49 84 IPR036443 -
Chy03g01140 150 SUPERFAMILY Ran binding protein zinc finger-like 106 144 IPR036443 -
Chy03g01140 150 SMART zf_4 114 140 IPR001876 -
Chy03g01140 150 SMART zf_4 5 29 IPR001876 -
Chy03g01140 150 SMART zf_4 55 81 IPR001876 -
Chy03g01140 150 Gene3D - 2 32 - -
Chy03g01140 150 Gene3D - 105 144 - -
Chy03g01140 150 Gene3D - 48 85 - -
Chy03g01140 150 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Chy03g01140 150 ProSitePatterns Zinc finger RanBP2-type signature. 57 78 IPR001876 -
Chy03g01140 150 ProSiteProfiles Zinc finger RanBP2 type profile. 112 143 IPR001876 -
Chy03g01140 150 ProSiteProfiles Zinc finger RanBP2 type profile. 53 84 IPR001876 -
Chy03g01140 150 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Chy03g01140 150 ProSitePatterns Zinc finger RanBP2-type signature. 116 137 IPR001876 -
Chy03g01140 150 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 1 148 - -
Chy03g01140 150 PANTHER ZINC FINGER PROTEIN 1 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01140 - - - csv:101219235 315.464
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02009 Chy-Chr1:25041621 Chy03g01140 Chy-Chr3:14676999 2.05E-41 wgd
Chy03g01140 Chy-Chr3:14676999 Chy05g01332 Chy-Chr5:17452482 5.81E-32 wgd
Chy03g01140 Chy-Chr3:14676999 Chy07g01625 Chy-Chr7:20298246 9.66E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g452 Blo01g01377 . Bda01g00734 . . Bpe02g00572 . . Cmo05g00409 Cmo12g00277 . Cma05g00396 . Car12g00309 Sed01g1363 Cpe07g00286 . Bhi04g00986 Tan02g2707 Cmetu03g1356 . . . Lcy13g1766 . . . . . . . Cone4ag1804 Cone7ag1712 . . . . . Cme03g01640 . . . . . . . . . . . . Cma12g00327 . Car05g00333 Cpe11g00340 . . . . . . . . Cla08g01315 Cam08g1775 Cec08g1357 Cco08g1477 Clacu08g1471 . Cre08g1258 Lsi08g01180 . Chy03g01140 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001025 2 6 2 1 2 1 5 2 2 2 1 1 4 3 3 5 2 4 4 1 2 3 3 2 3 2 3 5 5 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01140 Chy_Chr03 FPKM 15.466784 16.595144 25.567259 27.047258 34.743923 28.446875 36.108227 25.267075 22.651962 24.070328