Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01146 ATGCAGAACGCCGCCGTCATCTTCTTGTCGGTGCTTCTCTCCGCCGCCTTCCATCCTGCTCTCAGCCTCGTCGACGGGTATTTGCCAAATGGGGATTTCGAGAGAGGTCCGAAGGCGTCGGACATCAACGGCACGGTGGTTAAAGGCCCATACGCAATACCGGAATGGGAAATTTCAGGCTTCGTTGAGTACATAAAGTCCGGGCAGAAACAAGGCGACATGTTGCTGGTGGTGCCGGAGGGGGCGTTCGCCGTTCGGCTAGGAAACGAGGCATCGATCAAACAAAAGATCAAAGTAATCAAAGGACTTTACTATTCAATCACTTTCAGTGCCGCCCGAACCTGCGCTCAAGAGGAGCGGCTCAACATCTCCGTCGCGCCGGACTGGGGGGTTCTGCCGATGCAAACCCTTTACAACAGCAATGGATGGGACTTATACGCTTGGGCCTTCCAAGCCGAATCCGACGAGGTCGTTATTCTCATCCATAACCCCGGTGAAGAGGAAGATCCAGCTTGTGGCCCTCTCATTGACGCCATTGCCATTAAGACCCTCTACCCTCCTAAGGCCTCCAATGATAATCTGGTGAAGAATGGGGATTTTGAGAGTGGCCCATACGTGTTTCCCAACGCATCATCAGGTGTTTTGGTCCCACCGAATATCGAAGATGACCACTCTCCGATCCCCGGCTGGATGGTTGAATCTCTCAAGGCCGTCAAATACATCGATTCCGACCATTTCTCCGTTCCGAGCGGGAAACGCGCCGTCGAGTTAGTCGCAGGAAAAGAAAGCGCAATAGCCCAGATCGTCCGAACGATCCCTGGAAAAACCTACATCCTCTCGTTCGTCGTCGGAGATGCGAGCAACTCGTGCGAAGGATCTATGGTCGTTGAAGCTTTCGCTGGAAAAAATACACTGAAAGTGCCGTATCAGTCGAAAGGCAACGGCGGGTCGAAACCGGCAGCGCTAAAATTTAAGGCGGAATCGACGAGGACAAGAATTATGTTCTTGAGCACATTCTACACCATGCGAAGCGATGATTTCTCGTCGCTGTGTGGACCGGTGCTGGATAAAGCGCTGCCAAACCAGGCCACCGTAGATTACCCTAGCTTTAAGCTTGTAATTGTCGGAGATGGTGGAACAGGGAAGACAACTTTTGTAAAACGTCATCTTACTGGAGAGTTCGAGAAGAAATACGAACCTACAATCGGAGTTGAAGTTCATCCACTGGACTTCTTTACGAACTATGGAAAGATAAGGTTTTATTGCTGGGATACCGCTGGTCAGGAGAAGTTTGGTGGACTTAGAGATGGTTACTACATTCATGGGCAGTGTGCCATCATCATGTTTGATGTCACAGCTCGTTTAACATACAAAAATGTCCCAACATGGCATCGTGATCTCTGCAGGGTTTGTGAGAACATACCAATCGTATTGTGTGGAAACAAGGTGGATGTGAAAAACAGACAGGTTAAAGCAAAGCAAGTGACCTTCCACAGGAAGAAAAATCTTCAGTATTACGAAATCTCTGCAAAGAGTAACTACAACTTTGAGAAGCCCTTCTTGTACCTTGCCAGAAAGCTTGCTGGGAATCCGGAACTACACTTTGTCGAATCACCTGCCCTTGCTCCTCCTGAAGTCCAAATTGACTTGGCCGTACAAGAACAGCATGAACGAGAGTTGGCACAAGCTGCTGTACAACCTCTTCCTGATGAAGACGATGATGCTTTTGATTAA 1734 49.31 MQNAAVIFLSVLLSAAFHPALSLVDGYLPNGDFERGPKASDINGTVVKGPYAIPEWEISGFVEYIKSGQKQGDMLLVVPEGAFAVRLGNEASIKQKIKVIKGLYYSITFSAARTCAQEERLNISVAPDWGVLPMQTLYNSNGWDLYAWAFQAESDEVVILIHNPGEEEDPACGPLIDAIAIKTLYPPKASNDNLVKNGDFESGPYVFPNASSGVLVPPNIEDDHSPIPGWMVESLKAVKYIDSDHFSVPSGKRAVELVAGKESAIAQIVRTIPGKTYILSFVVGDASNSCEGSMVVEAFAGKNTLKVPYQSKGNGGSKPAALKFKAESTRTRIMFLSTFYTMRSDDFSSLCGPVLDKALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNPELHFVESPALAPPEVQIDLAVQEQHERELAQAAVQPLPDEDDDAFD* 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14714791 14723182 - Chy3G061260.1 Chy03g01146 223307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01146 577 Gene3D - 188 348 - -
Chy03g01146 577 ProSiteProfiles small GTPase Ran family profile. 363 527 IPR002041 GO:0003924|GO:0005525|GO:0006913
Chy03g01146 577 Gene3D - 360 575 IPR027417 -
Chy03g01146 577 ProSiteProfiles small GTPase Ras family profile. 361 566 IPR001806 GO:0003924|GO:0005525
Chy03g01146 577 SMART rab_sub_5 370 530 - -
Chy03g01146 577 PANTHER PLANT/F18G18-200 PROTEIN 7 357 - -
Chy03g01146 577 SMART ras_sub_4 367 530 - -
Chy03g01146 577 PANTHER OS02G0527500 PROTEIN-RELATED 7 357 - -
Chy03g01146 577 Pfam Protein of unknown function (DUF642) 193 357 IPR006946 -
Chy03g01146 577 Pfam Protein of unknown function (DUF642) 26 182 IPR006946 -
Chy03g01146 577 Pfam Ras family 371 527 IPR001806 GO:0003924|GO:0005525
Chy03g01146 577 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 553 IPR027417 -
Chy03g01146 577 SMART ran_sub_2 375 576 - -
Chy03g01146 577 CDD Ran 370 535 - -
Chy03g01146 577 SMART rho_sub_3 372 531 IPR001806 GO:0003924|GO:0005525
Chy03g01146 577 SUPERFAMILY Galactose-binding domain-like 26 182 IPR008979 -
Chy03g01146 577 TIGRFAM small_GTP: small GTP-binding protein domain 370 520 IPR005225 GO:0005525
Chy03g01146 577 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 430 448 IPR002041 GO:0003924|GO:0005525|GO:0006913
Chy03g01146 577 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 486 504 IPR002041 GO:0003924|GO:0005525|GO:0006913
Chy03g01146 577 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 524 546 IPR002041 GO:0003924|GO:0005525|GO:0006913
Chy03g01146 577 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 450 471 IPR002041 GO:0003924|GO:0005525|GO:0006913
Chy03g01146 577 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 383 397 IPR002041 GO:0003924|GO:0005525|GO:0006913
Chy03g01146 577 ProSiteProfiles small GTPase Rab1 family profile. 364 566 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01146 - - - csv:101219952 714.146
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00150 Chy-Chr2:1088992 Chy03g01146 Chy-Chr3:14714791 3.91E-120 dispersed
Chy02g01964 Chy-Chr2:23365012 Chy03g01146 Chy-Chr3:14714791 1.62E-154 dispersed
Chy02g01965 Chy-Chr2:23370414 Chy03g01146 Chy-Chr3:14714791 3.60E-31 dispersed
Chy03g01146 Chy-Chr3:14714791 Chy04g01245 Chy-Chr4:18971590 1.02E-138 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g439 . Blo12g01085 . Bda03g00062 . Bpe02g00576 Bma04g00060 . . Cmo12g00273 . . . . Sed08g0705 . . Bhi04g01002 Tan02g2699 Cmetu02g1205 . Hepe10g0272 . Lcy13g1760 . . . . . . . Cone4ag1810 Cone7ag1720 Cone17ag1037 Cone20ag0661 . . . Cme03g01644 . . . . . . . . . . . . Cma12g00321 . . . . . . . . . . . . . . . . . . . . Chy03g01146 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004712 2 1 2 3 1 1 2 1 1 1 1 1 2 1 1 2 1 5 0 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01146 Chy_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0