Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01149 ATGAGCAATATTATTGTCCCTCTACCGGCCAACCTTGTGACAGACGTAGGTGATCCAGGATGGATGAGCAAAGGGGACAACGCATGGCAGATGACTGCGGCGACGTTAGTTGGACTACAAAGCGTACCGGGTCTAATAATCCTATACGGGGGAGCGGTTAAGAAGAAATGGGCCATAAACTCAGCGTTTATGGCTCTATATGCGTTTGCCTGTGTGTTGGTGTGTTGGGTTGGGTGGGGTTATCGGTTGTCGTTTGGGGAAAAACTGGCGCCGTTTTGGGGGAAGTTGAATGTGGCATTGGATCAAGAGTATCTGTTGGCACCAGGTTTTGCTGGGAAGTTTCCAACAGCAACAATGGTGTTTTTTCAATTTGTGTTTGCGGCAATTACATTGGTTTTGATAGCTGGGGCTTTGCTTGGGCGTATGAACTTTTATGCTTGGATGTTGTTTGTGCCACTTTGGCTTACGTTTTCTTATACGTTTGTGGCTTTTAGTATTTGGAGTCCTGGTGGGTTTTTTGCTAAAATGGGACTCATTGATTACTCTGGTGGTTATGTTATTCATTTGTCCTCTGGTGTTGCTGGCTTCACTGCTGCTTATTGGGTTGGGCCACGGTTGTCGAAGGACAGAGAAAGCTTCCCTCCGAACAACATTCTTCTCATGCTAGCGGGAGCAGGGCTGTTGTGGATGGGTTGGACTGGTTTTAACGGGGGAGACCCCTACGCCGCCAACATCGACGCCTCACTGGCTGTTCTTAATACCCACGTTTGCACCGCCACCAGCCTCCTCACTTGGCTCATCTTCGACATCATCTTCTTCAGAAAGCCCTCTGTCATTGGCGCTGTCCAGGGAATGATCACCGGCCTTGTTTGCATCACCCCCGCCGCAGGAGTTGTTCAAGGATGGGCAGCAATTATAATGGGAGTACTATCAGGTTCAATCCCATGGTTCACAATGATGGTTGTTCACAAGAAATCCGCCATTCTCCAAAAGGTAGACGACACAATGGCCGTCCTCCACACCCACGCCATCGCCGGCAGCCTCGGTGGCATTTTAAGCGGCATCTTCGCCGAGCCACACCTCAACAACATCTTCTACGGCAACTACAACAAATACATCGGCCTTTTCTATGGCTTCAATACAAAACAAGTCAAACTCGGCTTCCGCCAACTTGGCGTCCAACTTCTCGGAATCATCTTCGTCACCCTCCTCAACATCATCGTCACTAGCCTTATCTGCGTCCTCCTCCAGTACATTGTCCCGCTCCGAATGTCGGAGGAGGACATGGCTATCGGAGACGAGGCCGCCCACGGTGAAGAGGCCTACGCCATTTGGGGCCAAGGAGAGAAGATGGATTCTTCTAAGTATGATATAGAGGCCCCAGTTTCCGCTAAACATAGGCATGCAGCTGGTCAGGTTGAAATGACTTGA 1431 49.9 MSNIIVPLPANLVTDVGDPGWMSKGDNAWQMTAATLVGLQSVPGLIILYGGAVKKKWAINSAFMALYAFACVLVCWVGWGYRLSFGEKLAPFWGKLNVALDQEYLLAPGFAGKFPTATMVFFQFVFAAITLVLIAGALLGRMNFYAWMLFVPLWLTFSYTFVAFSIWSPGGFFAKMGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLSKDRESFPPNNILLMLAGAGLLWMGWTGFNGGDPYAANIDASLAVLNTHVCTATSLLTWLIFDIIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAIIMGVLSGSIPWFTMMVVHKKSAILQKVDDTMAVLHTHAIAGSLGGILSGIFAEPHLNNIFYGNYNKYIGLFYGFNTKQVKLGFRQLGVQLLGIIFVTLLNIIVTSLICVLLQYIVPLRMSEEDMAIGDEAAHGEEAYAIWGQGEKMDSSKYDIEAPVSAKHRHAAGQVEMT* 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14748208 14750461 - Chy3G061290.1 Chy03g01149 223310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01149 476 SUPERFAMILY Ammonium transporter 21 424 - -
Chy03g01149 476 ProSitePatterns Ammonium transporters signature. 180 205 IPR018047 GO:0008519|GO:0016020|GO:0072488
Chy03g01149 476 PANTHER AMMONIUM TRANSPORTER MEP2 6 476 IPR001905 GO:0008519|GO:0016020|GO:0072488
Chy03g01149 476 TIGRFAM amt: ammonium transporter 26 442 IPR001905 GO:0008519|GO:0016020|GO:0072488
Chy03g01149 476 Pfam Ammonium Transporter Family 28 442 IPR024041 GO:0008519|GO:0016020|GO:0072488
Chy03g01149 476 PANTHER AMMONIUM TRANSPORTER 6 476 - -
Chy03g01149 476 Gene3D Ammonium transporter AmtB like domains 13 446 IPR029020 -
Chy03g01149 476 PRINTS Rhesus blood group protein signature 123 139 IPR002229 GO:0005887
Chy03g01149 476 PRINTS Rhesus blood group protein signature 219 237 IPR002229 GO:0005887
Chy03g01149 476 PRINTS Rhesus blood group protein signature 250 272 IPR002229 GO:0005887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00531 Chy-Chr2:3198504 Chy03g01149 Chy-Chr3:14748208 0 dispersed
Chy03g01149 Chy-Chr3:14748208 Chy04g02279 Chy-Chr4:27373563 1.22E-176 dispersed
Chy03g01149 Chy-Chr3:14748208 Chy05g00267 Chy-Chr5:2437527 8.64E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01149 K03320 - csv:101210590 956.436