Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01152 ATGTTTCCAACGAACAACATGTTCGGGGCAGCCGGAGAAGGAATATGGGAGAATGGAGCGGCTTGTGGAAGACAATACCGAGTGAGTTGCTTTAGTTCCGCCGTACCGGACTCGTGTGTTCCTGATCAGACGATTATGATCACGATCGTGGATCGTGCGGTTTCGACGTCTTCGAAAGCATTGGTGGCGGATACAACGATGACGTTGTCAAGGATAGCGTATAAAGCGATCGTTCAAAAAAATACGACGCGGGTGACCGTCGAATTCACGCAAACGTTAACTGTGAAGAAGGTGAAGTACGTCCATGTGTTGGGTTTCCGCCATTGA 327 49.24 MFPTNNMFGAAGEGIWENGAACGRQYRVSCFSSAVPDSCVPDQTIMITIVDRAVSTSSKALVADTTMTLSRIAYKAIVQKNTTRVTVEFTQTLTVKKVKYVHVLGFRH* 109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14761814 14762354 + Chy3G061320.1 Chy03g01152 223313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01152 108 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 1 91 - -
Chy03g01152 108 Pfam Lytic transglycolase 15 88 IPR009009 -
Chy03g01152 108 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 1 91 - -
Chy03g01152 108 SUPERFAMILY Barwin-like endoglucanases 5 91 IPR036908 -
Chy03g01152 108 Gene3D - 1 93 IPR036908 -
Chy03g01152 108 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 103 IPR007112 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01152 - - - csv:105434664 170.629
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01553 Chy-Chr7:19772374 Chy03g01152 Chy-Chr3:14761814 1.49E-08 transposed
Chy03g01152 Chy-Chr3:14761814 Chy05g01338 Chy-Chr5:17511777 1.41E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g405 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag0697 Cone7ag0657 . . . . . Blo18g00037 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g01152 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002120 3 2 2 2 3 2 3 1 2 2 1 2 3 2 2 3 2 2 2 2 2 2 2 2 2 2 2 1 2 4 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01152 Chy_Chr03 FPKM 8.666377 9.670654 29.773529 28.376511 104.648346 110.546501 110.225769 34.392517 32.322266 31.457645