Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01156 ATGTCAACCGCCGCTGTCCTTGCGCGTTCTAGCTCCTGGGCTCGGGCTCTCATCAACATCTCTCCCTACACTTTCTCCGCCATCGGAATCGCCATCGCCATCGGCGTTTCCGTCCTCGGCGCCGCCTGGGGGATTTACATCACGGGAAGCAGTTTGATTGGTGCGGCGATCAAAGCTCCTCGTATTACTTCCAAGAACTTGATTAGTGTAATTTTCTGTGAAGCTGTTGCTATATACGGTGTCATTGTTGCCATTATCTTACAGACCAAGTTAGAGAGTGTGTCAGCATCTCAGATATATGCTCCCGAGTCTCTAAGAGCAGGATACGCAATTTTTGCTTCTGGAATCATAGTTGGCTTTGCAAACCTTGTCTGCGGGCTGTGTGTGGGAATCATTGGAAGCAGCTGTGCATTATCAGATGCCCAGAACTCCTCCCTTTTTGTGAAGATTCTTGTAATCGAGATCTTCGGCAGTGCACTTGGGTTGTTCGGAGTAATTGTTGGGATAATTATGTCAGCTCAAGCCTCTTGGCCTGCAAAGAGAGGTTAA 549 48.63 MSTAAVLARSSSWARALINISPYTFSAIGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVSASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPAKRG* 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14787207 14788271 - Chy3G061360.1 Chy03g01156 223317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01156 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Chy03g01156 182 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 4 179 - -
Chy03g01156 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Chy03g01156 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 179 - -
Chy03g01156 182 Gene3D - 23 177 IPR035921 -
Chy03g01156 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179|GO:0046961|GO:1902600
Chy03g01156 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179|GO:0046961|GO:1902600
Chy03g01156 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179|GO:0046961|GO:1902600
Chy03g01156 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179|GO:0046961|GO:1902600
Chy03g01156 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Chy03g01156 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Chy03g01156 182 Pfam ATP synthase subunit C 28 87 IPR002379 GO:0015078|GO:0033177|GO:1902600
Chy03g01156 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01156 Chy-Chr3:14787207 Chy03g01404 Chy-Chr3:16796299 1.68E-09 dispersed
Chy06g00369 Chy-Chr6:2473337 Chy03g01156 Chy-Chr3:14787207 8.67E-10 transposed
Chy03g01156 Chy-Chr3:14787207 Chy04g00346 Chy-Chr4:3091120 2.83E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01156 K03661 - csv:101221052 325.479