Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01156 ATGTCAACCGCCGCTGTCCTTGCGCGTTCTAGCTCCTGGGCTCGGGCTCTCATCAACATCTCTCCCTACACTTTCTCCGCCATCGGAATCGCCATCGCCATCGGCGTTTCCGTCCTCGGCGCCGCCTGGGGGATTTACATCACGGGAAGCAGTTTGATTGGTGCGGCGATCAAAGCTCCTCGTATTACTTCCAAGAACTTGATTAGTGTAATTTTCTGTGAAGCTGTTGCTATATACGGTGTCATTGTTGCCATTATCTTACAGACCAAGTTAGAGAGTGTGTCAGCATCTCAGATATATGCTCCCGAGTCTCTAAGAGCAGGATACGCAATTTTTGCTTCTGGAATCATAGTTGGCTTTGCAAACCTTGTCTGCGGGCTGTGTGTGGGAATCATTGGAAGCAGCTGTGCATTATCAGATGCCCAGAACTCCTCCCTTTTTGTGAAGATTCTTGTAATCGAGATCTTCGGCAGTGCACTTGGGTTGTTCGGAGTAATTGTTGGGATAATTATGTCAGCTCAAGCCTCTTGGCCTGCAAAGAGAGGTTAA 549 48.63 MSTAAVLARSSSWARALINISPYTFSAIGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVSASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPAKRG* 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14787207 14788271 - Chy3G061360.1 Chy03g01156 223317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01156 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Chy03g01156 182 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 4 179 - -
Chy03g01156 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Chy03g01156 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 179 - -
Chy03g01156 182 Gene3D - 23 177 IPR035921 -
Chy03g01156 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179|GO:0046961|GO:1902600
Chy03g01156 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179|GO:0046961|GO:1902600
Chy03g01156 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179|GO:0046961|GO:1902600
Chy03g01156 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179|GO:0046961|GO:1902600
Chy03g01156 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Chy03g01156 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Chy03g01156 182 Pfam ATP synthase subunit C 28 87 IPR002379 GO:0015078|GO:0033177|GO:1902600
Chy03g01156 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01156 K03661 ATPeV0B, ATP6F; V-type H+-transporting ATPase 21kDa proteolipid subunit - csv:101221052 325.479
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01156 Chy-Chr3:14787207 Chy03g01404 Chy-Chr3:16796299 1.68E-09 dispersed
Chy06g00369 Chy-Chr6:2473337 Chy03g01156 Chy-Chr3:14787207 8.67E-10 transposed
Chy03g01156 Chy-Chr3:14787207 Chy04g00346 Chy-Chr4:3091120 2.83E-107 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy03g01604 . 376 1373 Primary Pumps ATPases(2) AT1G10130 82.8 0.0e+00 1621.7
Chy11g01306 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1340.1
Chy03g01413 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.2 8.0e-296 1013.1
Chy01g00757 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.3 3.4e-294 1007.7
Chy01g00757 . 6 819 Primary Pumps ATPases(2) AT2G21410 75.6 0.0e+00 1226.1
Chy03g01413 . 1 809 Primary Pumps ATPases(2) AT2G21410 73.4 0.0e+00 1197.6
Chy11g01306 . 9 820 Primary Pumps ATPases(2) AT2G21410 62.2 3.0e-298 1021.1
Chy01g00757 . 8 819 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1231.5
Chy03g01413 . 1 809 Primary Pumps ATPases(2) AT4G39080 74.3 0.0e+00 1192.9
Chy11g01306 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 5.6e-297 1016.9
Chy06g00369 . 28 129 Primary Pumps ATPases(2) AT4G34720 93.1 1.1e-38 156.4
Chy03g01403 . 36 130 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Chy03g01404 . 28 121 Primary Pumps ATPases(2) AT4G34720 100.0 9.2e-38 153.3
Chy06g00369 . 2 123 Primary Pumps ATPases(2) AT1G75630 95.9 1.3e-50 196.4
Chy03g01404 . 2 124 Primary Pumps ATPases(2) AT1G75630 95.1 5.1e-50 194.5
Chy03g01403 . 2 130 Primary Pumps ATPases(2) AT1G75630 90.7 4.7e-48 188.0
Chy06g00369 . 3 129 Primary Pumps ATPases(2) AT2G16510 93.7 1.3e-51 199.5
Chy03g01404 . 3 121 Primary Pumps ATPases(2) AT2G16510 99.2 8.4e-51 196.8
Chy03g01403 . 3 130 Primary Pumps ATPases(2) AT2G16510 92.2 3.5e-49 191.4
Chy06g00369 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.1e-52 202.6
Chy03g01404 . 1 121 Primary Pumps ATPases(2) AT1G19910 97.5 1.6e-51 198.7
Chy03g01403 . 1 130 Primary Pumps ATPases(2) AT1G19910 92.3 1.8e-50 195.3
Chy04g00346 . 1 175 Primary Pumps ATPases(2) AT2G25610 84.0 2.6e-71 265.4
Chy03g01156 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 2.9e-70 261.9
Chy06g00369 . 28 129 Primary Pumps ATPases(2) AT4G38920 93.1 3.1e-38 154.8
Chy03g01403 . 36 130 Primary Pumps ATPases(2) AT4G38920 98.9 5.2e-38 154.1
Chy03g01404 . 28 121 Primary Pumps ATPases(2) AT4G38920 100.0 2.6e-37 151.8
Chy04g00346 . 6 175 Primary Pumps ATPases(2) AT4G32530 77.5 2.0e-73 272.3
Chy03g01156 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 2.4e-71 265.4
Chy12g00153 . 1 1066 Primary Pumps ATPases(2) AT1G07810 80.4 0.0e+00 1667.5
Chy12g00153 . 1 1066 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1669.1
Chy03g01604 . 376 1373 Primary Pumps ATPases(2) AT1G10130 82.8 0.0e+00 1621.7
Chy12g00153 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.4 0.0e+00 1313.9
Chy02g01423 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.2e-57 219.2
Chy01g00662 . 6 489 Primary Pumps ATPases(2) AT1G76030 96.3 1.5e-268 921.8
Chy05g00536 . 553 814 Primary Pumps ATPases(2) AT3G58730 82.1 1.6e-117 419.1
Chy04g01674 . 14 466 Primary Pumps ATPases(2) AT3G42050 79.5 5.8e-208 720.3
Chy06g00369 . 3 129 Primary Pumps ATPases(2) AT2G16510 93.7 1.3e-51 199.5
Chy03g01404 . 3 121 Primary Pumps ATPases(2) AT2G16510 99.2 8.4e-51 196.8
Chy03g01403 . 3 130 Primary Pumps ATPases(2) AT2G16510 92.2 3.5e-49 191.4
Chy01g00662 . 1 489 Primary Pumps ATPases(2) AT4G38510 95.5 2.3e-269 924.5
Chy06g01559 . 177 360 Primary Pumps ATPases(2) AT1G64200 73.3 1.8e-65 245.7
Chy01g00662 . 9 489 Primary Pumps ATPases(2) AT1G20260 96.1 3.0e-266 914.1
Chy11g01306 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1340.1
Chy03g01413 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.2 8.0e-296 1013.1
Chy01g00757 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.3 3.4e-294 1007.7
Chy04g01523 . 1 351 Primary Pumps ATPases(2) AT3G28715 91.7 8.6e-191 662.9
Chy06g01559 . 177 406 Primary Pumps ATPases(2) AT4G11150 76.6 1.3e-89 326.2
Chy01g02105 . 1 624 Primary Pumps ATPases(2) AT1G78900 92.8 0.0e+00 1167.1
Chy01g00662 . 6 489 Primary Pumps ATPases(2) AT1G76030 96.3 1.5e-268 921.8
Chy01g00662 . 1 489 Primary Pumps ATPases(2) AT4G38510 95.5 2.3e-269 924.5
Chy01g00662 . 9 489 Primary Pumps ATPases(2) AT1G20260 96.1 3.0e-266 914.1
Chy05g00536 . 553 814 Primary Pumps ATPases(2) AT3G58730 82.1 1.6e-117 419.1
Chy06g01559 . 177 406 Primary Pumps ATPases(2) AT4G11150 76.6 1.3e-89 326.2
Chy06g01559 . 177 399 Primary Pumps ATPases(2) AT3G08560 68.1 7.7e-74 273.9
Chy06g01559 . 177 360 Primary Pumps ATPases(2) AT1G64200 73.3 1.8e-65 245.7
Chy02g01423 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.2e-57 219.2
Chy04g01674 . 14 466 Primary Pumps ATPases(2) AT3G42050 79.5 5.8e-208 720.3
Chy11g01306 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1340.1
Chy03g01413 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.2 8.0e-296 1013.1
Chy01g00757 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.3 3.4e-294 1007.7
Chy01g00757 . 6 819 Primary Pumps ATPases(2) AT2G21410 75.6 0.0e+00 1226.1
Chy03g01413 . 1 809 Primary Pumps ATPases(2) AT2G21410 73.4 0.0e+00 1197.6
Chy11g01306 . 9 820 Primary Pumps ATPases(2) AT2G21410 62.2 3.0e-298 1021.1
Chy01g00757 . 8 819 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1231.5
Chy03g01413 . 1 809 Primary Pumps ATPases(2) AT4G39080 74.3 0.0e+00 1192.9
Chy11g01306 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 5.6e-297 1016.9
Chy06g00369 . 28 129 Primary Pumps ATPases(2) AT4G34720 93.1 1.1e-38 156.4
Chy03g01403 . 36 130 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Chy03g01404 . 28 121 Primary Pumps ATPases(2) AT4G34720 100.0 9.2e-38 153.3
Chy06g00369 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.1e-52 202.6
Chy03g01404 . 1 121 Primary Pumps ATPases(2) AT1G19910 97.5 1.6e-51 198.7
Chy03g01403 . 1 130 Primary Pumps ATPases(2) AT1G19910 92.3 1.8e-50 195.3
Chy06g00369 . 28 129 Primary Pumps ATPases(2) AT4G38920 93.1 3.1e-38 154.8
Chy03g01403 . 36 130 Primary Pumps ATPases(2) AT4G38920 98.9 5.2e-38 154.1
Chy03g01404 . 28 121 Primary Pumps ATPases(2) AT4G38920 100.0 2.6e-37 151.8
Chy06g00369 . 2 123 Primary Pumps ATPases(2) AT1G75630 95.9 1.3e-50 196.4
Chy03g01404 . 2 124 Primary Pumps ATPases(2) AT1G75630 95.1 5.1e-50 194.5
Chy03g01403 . 2 130 Primary Pumps ATPases(2) AT1G75630 90.7 4.7e-48 188.0
Chy06g00369 . 3 129 Primary Pumps ATPases(2) AT2G16510 93.7 1.3e-51 199.5
Chy03g01404 . 3 121 Primary Pumps ATPases(2) AT2G16510 99.2 8.4e-51 196.8
Chy03g01403 . 3 130 Primary Pumps ATPases(2) AT2G16510 92.2 3.5e-49 191.4
Chy04g00346 . 6 175 Primary Pumps ATPases(2) AT4G32530 77.5 2.0e-73 272.3
Chy03g01156 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 2.4e-71 265.4
Chy04g00346 . 1 175 Primary Pumps ATPases(2) AT2G25610 84.0 2.6e-71 265.4
Chy03g01156 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 2.9e-70 261.9
Chy04g01523 . 1 351 Primary Pumps ATPases(2) AT3G28710 94.0 7.4e-198 686.4
Chy04g01523 . 1 351 Primary Pumps ATPases(2) AT3G28715 91.7 8.6e-191 662.9
Chy12g00153 . 1 1066 Primary Pumps ATPases(2) AT1G07810 80.4 0.0e+00 1667.5
Chy12g00153 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.4 0.0e+00 1313.9
Chy03g01604 . 376 1373 Primary Pumps ATPases(2) AT1G10130 82.8 0.0e+00 1621.7
Chy12g00153 . 1 1066 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1669.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001947 2 4 2 3 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 1 1 2 1 2 2 3 3 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01156 Chy_Chr03 FPKM 1.786427 2.162987 4.114917 4.298636 0.629694 0.152285 0.348334 1.819761 1.237409 1.99034