Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01169 ATGATGAAAGAAATTAAGGGTGCTGTCAGAATCACGCGATCCCAGTCTAAGTCTTCCAGTAGAATAGGAGCTATTTCACCCTCATTACAACTTTCACTCACAGAATTGCGCAAACGTGGTCATACAGAAAACTCTGAACTAGCACAGCTAGATGGAAGTAATGCTTCTGCCACTATTACTGTTGGTGTTCGGCGCAAAAGAAGAGCAGTGCTCAAGGATGTTACTAACATGTCCTGTGAGAGTAATAATTTGGGGTACTTGCATGCTTCTAAAGTTCAGGTTCAAGAGGTTTCACAGACCGAATCACTTGAAGATTCATCCATTAAAGGGATGGCAGAATCGCAACGTAGCTCTCCAGTGATGAAGCCAAACAAAAAAGAGACAAAGCAGGAGAATAAGTTTCAGAGTGTCATAGGATGCAGAAATTATGCGTCTCCCCTGCCCTCAGGATCAAATGAACACCAAATGAAAGATGAGGCTGCTGTTTGTGAGAAATTAAACCATCTCGGTACTTTGGATGCTGTCTCAAACTCAGAGGATCCTCAAGCATGCACCCTATATGCCCATAATATATATGATACTAATCGGGTAATAGAGCTTGATCAAAGGCCTTCTACTAATTATATGGAAAAGTTACAGAAATATATCACTCCAATCATGCGAGGCATTCTAATCGATTGGCTTGTGGAGGTTTCTGATGAATATAAATTGATCTCTGACACGCTTTACCTCACTGTAAATCTCATCGATCGGTTTCTCTCTGAAAGCTGCATTGAGAGGCATAAATTACAACTTCTTGGCGTTACTTGCATGTTAATTGCCTCTAAATATGAAGAAGTCTGTGCACCAATTGTGGAAGAGTTTTGCTTCATCACAGACAACACCTATGCGAGAGAAGAGGTACTAAAAATGGAGGGTGAAGTTCTGAACGTGCTTAATTTTCAGCTGTCGGTACCCACTACAAAAACATTTCTCAGGAGATTTGTGCAGGTAGCACGGGCTTCTTGCAAGGAATCTTGTGTGGAGCTGGAGCATTTAACAAATTATCTAGCAGAGTTGACTCTTGGAGAGTACAGTTTCCTCAGGTTTCTGCCTTCAGCAGTAGCTGCATCAGTTGTGTTCTTAGCTAGATGGATTCTGCACCAACCAAATCAACCATGGAACTCGGCTCTGGAGCATTATACCAATTACAATGCCTCTCAGCTAAAAATTCCCGTACTTGCCTTGGAAGATCTAAGGTTGAACTCCACAAGTTGCGGTTTAAACGCCGTATTCCAAAAGTATAGACAACAGAAGTTGGGAAGTGTGGCAACTTTAGCCTCCACAAAATCAGTTCTCTCAGCCTTCCCAAACCAGACAGATAACCTGAATTCCAGGGACATTTGA 1386 42.06 MMKEIKGAVRITRSQSKSSSRIGAISPSLQLSLTELRKRGHTENSELAQLDGSNASATITVGVRRKRRAVLKDVTNMSCESNNLGYLHASKVQVQEVSQTESLEDSSIKGMAESQRSSPVMKPNKKETKQENKFQSVIGCRNYASPLPSGSNEHQMKDEAAVCEKLNHLGTLDAVSNSEDPQACTLYAHNIYDTNRVIELDQRPSTNYMEKLQKYITPIMRGILIDWLVEVSDEYKLISDTLYLTVNLIDRFLSESCIERHKLQLLGVTCMLIASKYEEVCAPIVEEFCFITDNTYAREEVLKMEGEVLNVLNFQLSVPTTKTFLRRFVQVARASCKESCVELEHLTNYLAELTLGEYSFLRFLPSAVAASVVFLARWILHQPNQPWNSALEHYTNYNASQLKIPVLALEDLRLNSTSCGLNAVFQKYRQQKLGSVATLASTKSVLSAFPNQTDNLNSRDI* 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14889634 14896054 + Chy3G061490.1 Chy03g01169 223330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01169 461 Gene3D - 204 317 - -
Chy03g01169 461 CDD CYCLIN 317 397 IPR013763 -
Chy03g01169 461 MobiDBLite consensus disorder prediction 1 23 - -
Chy03g01169 461 CDD CYCLIN 220 309 IPR013763 -
Chy03g01169 461 PANTHER CYCLINS 46 444 IPR039361 -
Chy03g01169 461 PANTHER CYCLIN-A2-4 46 444 - -
Chy03g01169 461 Gene3D - 191 438 - -
Chy03g01169 461 MobiDBLite consensus disorder prediction 98 119 - -
Chy03g01169 461 PIRSF Cyclin_A_B_D_E 11 454 IPR039361 -
Chy03g01169 461 SMART Cyclin_C_2 319 442 IPR004367 -
Chy03g01169 461 Pfam Cyclin, C-terminal domain 319 440 IPR004367 -
Chy03g01169 461 SUPERFAMILY Cyclin-like 179 316 IPR036915 -
Chy03g01169 461 SMART cyclin_7 226 310 IPR013763 -
Chy03g01169 461 SMART cyclin_7 323 411 IPR013763 -
Chy03g01169 461 MobiDBLite consensus disorder prediction 98 132 - -
Chy03g01169 461 Pfam Cyclin, N-terminal domain 191 317 IPR006671 -
Chy03g01169 461 ProSitePatterns Cyclins signature. 221 252 IPR006671 -
Chy03g01169 461 SUPERFAMILY Cyclin-like 318 442 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01169 Chy-Chr3:14889634 Chy07g00171 Chy-Chr7:1422202 7.42E-93 dispersed
Chy10g00215 Chy-Chr10:5472752 Chy03g01169 Chy-Chr3:14889634 4.72E-16 transposed
Chy01g02038 Chy-Chr1:25216266 Chy03g01169 Chy-Chr3:14889634 2.08E-113 wgd
Chy03g01169 Chy-Chr3:14889634 Chy04g00342 Chy-Chr4:3059342 6.38E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01169 K06627 - csv:101211578 878.241