Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01171 ATGGACGTTCCCTCAGTGGAACTAAATTGTGATAGTGAAGGAGACTCTTACCCTTTATTAATGGCACGACCTGAACATTCTAACAGCAATGAGCATATCATTGACATACCTGGTGCTGGTGATTCTGGCCCCTCTGGTCTGCCACATGGTAGGAGTTCAAATGGCTTAAATTCATCGCAGCCTGAAGATAGACCTTCAAGTAGTACACGAGTTCCCTTGTCCCAACCCTCAACTTCTTCTACTGGATCAAATTCTAGAAATTCCTCATTCATAAGAAGAGGAGATGCACGTCGTCGTAGAAGTCCATTAAATTCTGGCTTATGGATATCTATTGAATTACTACTCACTATGAGCCAGATTATTGCAGCTATTATTGTCTTATCATTGTCAAAGAATGAAAAACCCCGTGCCCCTTTGTTTGCATGGATTGTGGGATATGCATCCGGATGTGGTGCCACCCTTCCTCTTCTATACTGGCGTTATCGACACCGCAATCAGGCTTCAGAACAAGATTCTCTTCAGTCCAGCCAGAATTCTTCTCGCATTAATGTTCCTGCTGGGCCATTCTCTCTTTCAGTTTCTAGGGCATCAGAAGGGGAAGAACTTCAGCATCCTGCCCCATCTCCTAGAGGCAGTCAAGGGTCAGGAGTACTATCAGCAAGATTAAAAGTACTGGTTGAATATTTTAAGATGGGTCTGGATTGCTTCTTTGCTGTTTGGTTTGTAGTTGGTAACGTATGGATCTTTGGAGGGCATTCATCAGCCTCTGAGGCTCCTAACTTGTACAGGCTATGTATAGTGTTTCTTACCTTCAGCTGTATTGGTTATGCAATGCCTTTCATTCTATGTGTAACCATCTGCTGTTGTCTTCCTTGTATAATTTCCATCCTTGGGTTTAGAGAGGACTTGTCACAGACACGAGGAGCCACATCGGAATCTATTAATGCATTACCGACTTATAAGTTTAAACTGAAGAAAAGTAGAAGTGGGGATGACAGAGAGAACAACTCCGGGGCTGGTGAAGGAGGAGGGGTTGTGGCTGCTGGAACTGAAAAGGAGCGAGTGATTTCTGGAGAAGATGCTGTCTGTTGCATCTGCCTAGCAAAATACGCCAACAATGATGAACTGAGGGAGTTGCCATGTTCACACTTTTTCCACAAGGACTGCGTAGATAAGTGGTTGAAGATCAATGCTCTGTGCCCGCTTTGCAAAGCCGAGGTTGGTGAGAGTATCATCGGCTCTCTCGAGGGGACAAACAGACAACAGGGTGATTAG 1275 44.63 MDVPSVELNCDSEGDSYPLLMARPEHSNSNEHIIDIPGAGDSGPSGLPHGRSSNGLNSSQPEDRPSSSTRVPLSQPSTSSTGSNSRNSSFIRRGDARRRRSPLNSGLWISIELLLTMSQIIAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDSLQSSQNSSRINVPAGPFSLSVSRASEGEELQHPAPSPRGSQGSGVLSARLKVLVEYFKMGLDCFFAVWFVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDLSQTRGATSESINALPTYKFKLKKSRSGDDRENNSGAGEGGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINALCPLCKAEVGESIIGSLEGTNRQQGD* 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14906893 14909823 + Chy3G061510.1 Chy03g01171 223332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01171 424 CDD RING-H2_RNF111_like 362 404 - -
Chy03g01171 424 SMART ringv_2 362 404 IPR011016 GO:0008270
Chy03g01171 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 411 IPR013083 -
Chy03g01171 424 ProSiteProfiles Zinc finger RING-type profile. 363 404 IPR001841 -
Chy03g01171 424 SUPERFAMILY RING/U-box 355 409 - -
Chy03g01171 424 Pfam Ring finger domain 363 404 IPR001841 -
Chy03g01171 424 SMART ring_2 363 403 IPR001841 -
Chy03g01171 424 MobiDBLite consensus disorder prediction 1 97 - -
Chy03g01171 424 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 421 - -
Chy03g01171 424 MobiDBLite consensus disorder prediction 47 90 - -
Chy03g01171 424 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01123 Chy-Chr1:12866768 Chy03g01171 Chy-Chr3:14906893 1.61E-43 dispersed
Chy01g01124 Chy-Chr1:12873412 Chy03g01171 Chy-Chr3:14906893 6.45E-53 dispersed
Chy03g01171 Chy-Chr3:14906893 Chy06g00197 Chy-Chr6:1291363 1.39E-49 dispersed
Chy03g01171 Chy-Chr3:14906893 Chy03g01193 Chy-Chr3:15068126 2.17E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01171 - - csv:101211818 813.913