Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01175 ATGCCGGCAGTCGAAAGCTTGTTAAGTCCATCCGCATCCAAGCTATTTACTTCCAAATCCTTGCTCAATCCTTTCATTTCCAGTTCCTCGATCTTCTCGCCCGCTCCGCGATTCCGCAGATTACCTTCTTCTTCTTCTTCTTCGTCGCTGTCGATCAGATGTTCAGCAACTCAGCAAATGGAGGCTGTGGTTGATTCTGTTACTCCAGGGCAGTTCCGAGTCGATGTTCTCTCAGAATCACTGCCATTCATCCAGAAATTTCGAGGTAAAACGATCGTTGTCAAGTATGGAGGTGCCGCCATGAAATCGCGGTCGCTTCAAGCTTCGGTTGTTAACGACCTTGTTCTTCTCTCCTGCGTCGGCCTTCGCCCGATCTTAGTCCATGGCGGTGGGCCGGAAATCAATAACTGGCTCAAACGCCTGAACATTGAGGTCGTTTTCCGCGACGGTCTTCGAGTGACCGACGCCGAGACAATGAAAATAGTATCGATGGTATTGGTCGGCGATGTGAACAAGAATCTAGTTTCATTGATCAATAAGGCAGGAGCATCAGCCGCAGGGCTCTGTGGTGTGGACGGCCGGCTACTCATGGCTCGGCCAGCTCCTAACGCGGCACAGTTAGGGTTCGTAGGCGAGGTCGCACGTGTGGACCCTACGGTTCTACAGGCACTTCTGGACAAAGGCCACATTCCGGTGGTCTCATCGGTGGCTGCCGATGAGTCAGGGCAGATGTACAACATCAACGCGGACACAGTCGCTGGCGAATTAGCGGCGGCGCTAGGGGCAGAGAAGCTGATCTTACTAACGGATGTGGCGGGGATTCTGGAAGATCGTGATGATCCGAAAAGCTTAGTGAAACAGATAGACATTAAAGGAGTGAAGAAGATGATGGACGAGGGAAGAATCGGCGGAGGGATGATTCCGAAGGTGAATTGTTGTGTCCGATCGTTAGCTCAGGGAGTGAGGACCGCGAGTATCATCGACGGAAGGCTGGAGCATTCGTTGCTGCTAGAAATCATGACAGACAATGGAGCTGGAACCATGATTATTGGCTAA 1056 51.7 MPAVESLLSPSASKLFTSKSLLNPFISSSSIFSPAPRFRRLPSSSSSSSLSIRCSATQQMEAVVDSVTPGQFRVDVLSESLPFIQKFRGKTIVVKYGGAAMKSRSLQASVVNDLVLLSCVGLRPILVHGGGPEINNWLKRLNIEVVFRDGLRVTDAETMKIVSMVLVGDVNKNLVSLINKAGASAAGLCGVDGRLLMARPAPNAAQLGFVGEVARVDPTVLQALLDKGHIPVVSSVAADESGQMYNINADTVAGELAAALGAEKLILLTDVAGILEDRDDPKSLVKQIDIKGVKKMMDEGRIGGGMIPKVNCCVRSLAQGVRTASIIDGRLEHSLLLEIMTDNGAGTMIIG* 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14943089 14944144 - Chy3G061550.1 Chy03g01175 223336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01175 351 TIGRFAM argB: acetylglutamate kinase 91 326 IPR004662 GO:0005737
Chy03g01175 351 PANTHER N-ACETYLGLUTAMATE SYNTHASE 10 351 - -
Chy03g01175 351 Gene3D - 67 351 IPR036393 -
Chy03g01175 351 PRINTS Glutamate 5-kinase family signature 121 135 IPR001057 GO:0005524|GO:0016301
Chy03g01175 351 PRINTS Glutamate 5-kinase family signature 248 275 IPR001057 GO:0005524|GO:0016301
Chy03g01175 351 PRINTS Glutamate 5-kinase family signature 301 321 IPR001057 GO:0005524|GO:0016301
Chy03g01175 351 CDD AAK_NAGK-C 76 349 IPR041727 -
Chy03g01175 351 Hamap Acetylglutamate kinase [argB]. 89 344 IPR037528 GO:0003991|GO:0006526
Chy03g01175 351 Pfam Amino acid kinase family 90 327 IPR001048 -
Chy03g01175 351 PANTHER BNAC04G55460D PROTEIN 10 351 - -
Chy03g01175 351 SUPERFAMILY Carbamate kinase-like 73 350 IPR036393 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01175 K00930 argB; acetylglutamate kinase [EC:2.7.2.8] - csv:101203871 605.905
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00832 Chy-Chr2:5284150 Chy03g01175 Chy-Chr3:14943089 8.50E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g258 . . . . . . . . Cmo05g00670 . . Cma05g00642 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00587 Cpe11g00565 . . . . . . . . . . . . . . . Lsi08g01144 . Chy03g01175 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009145 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01175 Chy_Chr03 FPKM 266.658356 282.600464 158.770798 147.624207 203.613495 218.72023 189.020035 270.958435 264.146881 261.332397