Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01180 ATGACTTCCATGGCTGCCTCGGCAACCTCCGTTGCACTTTTTCCTTCAAAACTGGTTTTCAAGGGACGATTCGAGCAGTCGAGATCGAAGTTTCTTACTCCAACCTCAACATCTTCAATTCCATGTCATTCCATTTCAATTTCATCTCCGTTCCATCGGCGCAAGCCATTCGGAATCCAGGCGTCGGTTTCGATCTCGGATCCTCAAGTCCGAACTGGTCCTGATGATCTCGTTGCGTCCATTCTCTCGAAGGTAATGTTTCAAGATTTGCTTAGTTTAGTTGATCTTGCAACTGATTATAGGGTGACAGGAAGCGATAGAGGAGTATTATTAAGTGAAGAACAGCACAAAGAGGTTGCTGAAGTAGCTGAAGAATTGCAAAAGTATTGTGTAAACGAGCCTGTTAAATGTCCTCTCATATTTGGAGCTTGGAATGTTGAGTATTGCTCTGTACCAACATCGCCTGGGGGTGGATACAGAAGTGCAGTGGGTCGCATTTTTTTCAAGACAAAGGAAATGATTCAGGTTGTGGAAGCTCCTGATACTATAAAAAACAAGGTGTCATTTTCTGCCCTTGGTTTCTTGGATGGACAAGTCTCTTTGACAGGAAAATTGACAGCACTGGATGATAAGTGGATTCGAGTTGTGTTCGAGTCGCCTGAACTTAAAGTTGGAGGATTAGAGTTTCGATATGGTGGCGAAAGCGAGGTACAACTCCAGATTACATACATAGATGACAAGTTAGCAATTGAATCGGCACCGTCCCAAATTCTTGTGCTTGGATTTCTGCACGGAGCTCTTAACTCCCTCAAGCGTGATATATCTCGGATGTTCGCCGTCTTCTACGGCCGACCTGACATTGATGAAGCGGCGAGGTCTAATGAGGATGAGGATTCATTACATCCTGCTCTTAAAAGTTTAATGACAACTGTCGGTGACCATTGCTATTTGAGATCTTCGGATTGCTTTTCAGAAAAGCGTAATTTTAATGGCGAAGGTGATCCGGGGGCTGTTTTCAACGTGTTGGACGCTTTGCTCAAGGGTAGTCTAGACCGTTTGAAGACCATGAGGGAAAGCATATGTTTGGCGAAGTCAGGTCTTCAAAAGTGTGTTTTGGAGGCTGTTCAACAACCTGACTACACAGTCATGGTTAGGGATTTGTGTTTAAAAGGAAAGTTTGGAGCAGCTCTTTTGCTTCGGAGAAAGTTAATAAAAGAAGGTTTTGCTGTTGATTTAGTCACACATAATTATCTTCTTAATGGACTGTGTATAAACTGTGATATGGAGATGGCAGATTCTCTATTTAGGGAAATGCTAGAAATGGGTCCTTCTCCCAATTGTGCCACATACAACATCATTATTAAAGGTTTCTGCCTTCGTATGAATATGGATAAAGCTCTTGACCTATTTTATACCATGGTTAATAGTGGTGTTAGGCCAAGTAGAATTACCTATAACATACTCTTACATGCATTGTGCAAGAGAGGCATCTTGGTGGATGCTAGGAAGCTTCTTGAAGTTATCCTAGGTGATGATATTAAAACAACAGATGATGCAATCACATCAACTATACTGATGGATAGTTGTTTTAAAAGTGGAGACACAATCCAGGCCGTTGCTTTATGGGACAAGATGGTTGAAAAGAAGACTGAGATTGATGTTGTTGCATACAATGTTCTTATTCACGGGCTTTGCTTGAATCAAGACAAGAAAATTGCGCTTGGCTATGTTGCTGATATGCTTAAGAGAGGTTTTCTTCCCGACATCTTTACATACAACACTCTAATCAGTGCTTTTTGTAAAGAGGGCCAATTTGGTGATGCTTACTATATCCATGATGTCATGTCAAGAATGGGTGTTTCTCCAGATCAAGTTTTATACAAAATGATTATTCAAGCTCTATGCATGAATGGAGATGCTATCAAAGCCGATGAGTTTCTTCACTCAATGTTAGAAAAATCAATGGTGCCTGAGCCTCATATTTGGAACCTGATAATTGATTGTTATGGAAGGTATGGATATCTGAGCAATGCAATCTCCACAAGGGATCAGATGTTGGTTGCTGGCGTGCAACCAAATGTATTTACTTACAATGCATTAATTCATGCACAAGTTAGTGGGGGAAACATATTTAGTGCATATTCTTTGAAAAAGGAAATGCTTTTGTTAGGTCTTTTTCCAGACGTTGTTACTTATAATTTATTGATAAACGGTGCTTGTAAGCATGGACAAATTCGTTTTGCCCTTCAATTATATGATGAAATGCTGAGAAAGGGATATGAAGCAGATAAGATAACATACACAGAACTAATAAATGGTCACTGTATGTGTGGTGAAATGAAGGAGGCAGAAGATCTATTTTTTGAGTTGCATAGATCTGGGTTGCCAATGGATATTGTTCCATTTAAAGTTATTTTTGAAAAGTACCAAAAGATAGGAGAGCCTGACATGGCATTGAAATTTTATCGAAGGTGGTTGGCAAGGATGGCTTGA 2493 40.31 MTSMAASATSVALFPSKLVFKGRFEQSRSKFLTPTSTSSIPCHSISISSPFHRRKPFGIQASVSISDPQVRTGPDDLVASILSKVMFQDLLSLVDLATDYRVTGSDRGVLLSEEQHKEVAEVAEELQKYCVNEPVKCPLIFGAWNVEYCSVPTSPGGGYRSAVGRIFFKTKEMIQVVEAPDTIKNKVSFSALGFLDGQVSLTGKLTALDDKWIRVVFESPELKVGGLEFRYGGESEVQLQITYIDDKLAIESAPSQILVLGFLHGALNSLKRDISRMFAVFYGRPDIDEAARSNEDEDSLHPALKSLMTTVGDHCYLRSSDCFSEKRNFNGEGDPGAVFNVLDALLKGSLDRLKTMRESICLAKSGLQKCVLEAVQQPDYTVMVRDLCLKGKFGAALLLRRKLIKEGFAVDLVTHNYLLNGLCINCDMEMADSLFREMLEMGPSPNCATYNIIIKGFCLRMNMDKALDLFYTMVNSGVRPSRITYNILLHALCKRGILVDARKLLEVILGDDIKTTDDAITSTILMDSCFKSGDTIQAVALWDKMVEKKTEIDVVAYNVLIHGLCLNQDKKIALGYVADMLKRGFLPDIFTYNTLISAFCKEGQFGDAYYIHDVMSRMGVSPDQVLYKMIIQALCMNGDAIKADEFLHSMLEKSMVPEPHIWNLIIDCYGRYGYLSNAISTRDQMLVAGVQPNVFTYNALIHAQVSGGNIFSAYSLKKEMLLLGLFPDVVTYNLLINGACKHGQIRFALQLYDEMLRKGYEADKITYTELINGHCMCGEMKEAEDLFFELHRSGLPMDIVPFKVIFEKYQKIGEPDMALKFYRRWLARMA* 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14972410 14980032 - Chy3G061600.1 Chy03g01180 223341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01180 830 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 763 797 IPR002885 -
Chy03g01180 830 Gene3D Tetratricopeptide repeat domain 579 656 IPR011990 GO:0005515
Chy03g01180 830 Gene3D Tetratricopeptide repeat domain 510 578 IPR011990 GO:0005515
Chy03g01180 830 Gene3D Tetratricopeptide repeat domain 349 506 IPR011990 GO:0005515
Chy03g01180 830 TIGRFAM PPR: pentatricopeptide repeat domain 625 657 IPR002885 -
Chy03g01180 830 TIGRFAM PPR: pentatricopeptide repeat domain 695 729 IPR002885 -
Chy03g01180 830 TIGRFAM PPR: pentatricopeptide repeat domain 449 481 IPR002885 -
Chy03g01180 830 TIGRFAM PPR: pentatricopeptide repeat domain 523 553 IPR002885 -
Chy03g01180 830 TIGRFAM PPR: pentatricopeptide repeat domain 590 623 IPR002885 -
Chy03g01180 830 TIGRFAM PPR: pentatricopeptide repeat domain 413 447 IPR002885 -
Chy03g01180 830 TIGRFAM PPR: pentatricopeptide repeat domain 765 798 IPR002885 -
Chy03g01180 830 TIGRFAM PPR: pentatricopeptide repeat domain 661 694 IPR002885 -
Chy03g01180 830 TIGRFAM PPR: pentatricopeptide repeat domain 555 589 IPR002885 -
Chy03g01180 830 TIGRFAM PPR: pentatricopeptide repeat domain 483 510 IPR002885 -
Chy03g01180 830 TIGRFAM PPR: pentatricopeptide repeat domain 730 763 IPR002885 -
Chy03g01180 830 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Chy03g01180 830 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Chy03g01180 830 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 251 828 - -
Chy03g01180 830 Pfam PPR repeat 625 653 IPR002885 -
Chy03g01180 830 Pfam PPR repeat 413 442 IPR002885 -
Chy03g01180 830 Pfam PPR repeat 521 548 IPR002885 -
Chy03g01180 830 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 658 692 IPR002885 -
Chy03g01180 830 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 251 828 - -
Chy03g01180 830 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 693 727 IPR002885 -
Chy03g01180 830 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 553 587 IPR002885 -
Chy03g01180 830 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 518 552 IPR002885 -
Chy03g01180 830 Gene3D Tetratricopeptide repeat domain 665 830 IPR011990 GO:0005515
Chy03g01180 830 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 480 IPR002885 -
Chy03g01180 830 Pfam PPR repeat family 553 601 IPR002885 -
Chy03g01180 830 Pfam PPR repeat family 449 494 IPR002885 -
Chy03g01180 830 Pfam PPR repeat family 727 775 IPR002885 -
Chy03g01180 830 Pfam PPR repeat family 660 703 IPR002885 -
Chy03g01180 830 Pfam PAP_fibrillin 102 237 IPR006843 -
Chy03g01180 830 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 623 657 IPR002885 -
Chy03g01180 830 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 728 762 IPR002885 -
Chy03g01180 830 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01180 - - - csv:101212779 1164.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01180 Chy-Chr3:14972410 Chy02g01509 Chy-Chr2:12702187 1.94E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g221 . . . . . . . . . . . Cma05g00638 . . . . . Bhi04g01065 . . . . . Lcy13g1705 . . . . . . . Cone4ag1847 . . . . . . . . Blo18g00051 . . . . Bma01g01305 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g01180 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002677 3 5 2 1 1 1 3 0 1 1 2 1 3 2 2 3 1 3 3 1 1 1 1 2 2 1 2 2 2 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01180 Chy_Chr03 FPKM 2.180416 1.921743 3.506667 2.873854 5.058288 3.972754 4.539616 4.97807 4.599405 4.981091