Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01182 ATGCCAGGATCACGTCAAAGGCCATGTTTAAAGCCATCTGTAGACATTGTTATATTGGTTTCGTTGGTCAGCATATTTGTATTTGGTGCCTATGTTTATCCACATAGAACCTCTCTGCTTTGTTATATCTTTTCCAGTGGCTGTGTCAATGGTGCATTTGAACGGCCACTGCCAGTTGCTTATCGGGAATTAACTGATGAAGAGACTGCAACTCGGGTTATAATGAAGGAAATTTTGAAGAAACCTCTAGCTCAATCTAAGAATCCGAAAATTGCCTTTATGTTTTTGACTCCAGGTTCACTACCTTTTGAGAAGCTATGGCATAAATTTCTTGATGGCCACGATGACAGATTTTCTATATATGTGCATGCATCTAGAGAGAAAGTGGAGCGTGCGAGCCCCCATTTTGTTGGTCGTGACATTCGCAGTGAAAAGGTAGCCTGGGGAGAAATTTCTATGGTTGATGCAGAGAAGAGACTTTTGGCAAATGCACTTTTAGACCCCGATAATCAGCACTTTGTTTTATTATCTGAGAGTTGCTTACCTCTTCACGACTTTGAGTATATTTACAACTATTTGATATTTACCAACGTCAGCTATATCGATTGTTTTGAAGACCCTGGTCCTCATGGAACTGGTAGGTACTCAGACCACATGTTACCTGAAATTGAAAAGAAAGATTTCCGTAAAGGTTCTCAGTGGTTTTCTATGAAGCGTCGACATGCTATTATTGTAATGGCTGACAGTCTTTACTATACAAAATTCAAACATTACTGCAAGCGAACTAAGGATGGCCCCAACTGCTATGCCGATGAGCACTATTTTCCAACCCTTTTTCATATGATCGACCCTGGTGGAATTGCAAATTGGTCAGTAACGCATGTTGATTGGTCTGAGGGAAAGTGGCATCCAAAAACATATAGGACTCAAGATGTCACCTATGAGCTTCTGAGGAACATCACCTCAATAGACGAGATCATTCACGTTACAACTACTGTCCCGCTTCTTCCTAGAGCTTTAGCTGATCCATTTTTGTGTAGAGTCGAAGCCTACAATCCTGTGGCTGCCACGGTTAGTCGGGTCAACCTTGATGTAGATTATGGTCCTGTCGATCTGCATGAAGAGGGTGAGGTCTCTATTGCTCGGCCAACTCCTCTATCTCGCACACAGACTATTGACGGAAAGAATACATACTAG 1197 41.94 MPGSRQRPCLKPSVDIVILVSLVSIFVFGAYVYPHRTSLLCYIFSSGCVNGAFERPLPVAYRELTDEETATRVIMKEILKKPLAQSKNPKIAFMFLTPGSLPFEKLWHKFLDGHDDRFSIYVHASREKVERASPHFVGRDIRSEKVAWGEISMVDAEKRLLANALLDPDNQHFVLLSESCLPLHDFEYIYNYLIFTNVSYIDCFEDPGPHGTGRYSDHMLPEIEKKDFRKGSQWFSMKRRHAIIVMADSLYYTKFKHYCKRTKDGPNCYADEHYFPTLFHMIDPGGIANWSVTHVDWSEGKWHPKTYRTQDVTYELLRNITSIDEIIHVTTTVPLLPRALADPFLCRVEAYNPVAATVSRVNLDVDYGPVDLHEEGEVSIARPTPLSRTQTIDGKNTY* 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14983271 14989112 + Chy3G061620.1 Chy03g01182 223343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01182 398 PANTHER - 5 336 - -
Chy03g01182 398 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 5 336 IPR044174 GO:0016757
Chy03g01182 398 Pfam Core-2/I-Branching enzyme 91 320 IPR003406 GO:0016020|GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01182 - - - csv:101204840 683.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01182 Chy-Chr3:14983271 Chy05g00878 Chy-Chr5:12953583 3.13E-161 dispersed
Chy03g01182 Chy-Chr3:14983271 Chy07g00226 Chy-Chr7:1852901 2.70E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g220 . . . Bda03g00462 . . . . . Cmo12g00236 . . . Car12g00269 . Cpe07g00246 . Bhi04g01067 . . . . . Lcy13g1332 . . . . . . . . . . . . . . Cme03g01813 . Blo18g00052 . Bda13g01364 . . . . . . . . Cma12g00284 . . . . . . . . . . . . . . . . . . . . Chy03g01182 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000821 3 8 2 2 3 2 4 2 2 2 2 2 4 3 3 4 2 5 5 2 3 3 2 2 3 2 2 6 4 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01182 Chy_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.507994