Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01187 ATGGATTTTGTACTTGCGAATTGCACGCATGCCGTTTCGTTTTCTGCTAAACAACGCAGCTTGAAAGGTAGGAGTAAGACTGTGGGGGGAAGGAAGCAGAGGTTTTCTGTGATTCGAATTACTAATTCTGCAGCTGAATTTTCCGGTAGCAAAGCTGCAAGTTCCGGTGATAAAAAGGATTGGCAGGTGCCTAAATCTAGTACTGCCTTGGAGTTGCTAGATATCGAGCGTGGTGTTTGCATACCATTTCGCAAGTATTCTCCCGAGACAGTGAGGAATAAGGTATTGGAATCCAGAGGAGCTGTCTTGTCTCTCATTTCTCGCGGTGTGGAGATTGTTTGGAATCTCGGATTATACTGGTCTATATTGATGTATGACTGCTTTGTCGGAAGGGATGAAGAGGTCGTTCCATTTCGTGCTCAGCAGCTTAGAAAACTCTTGTGTGATCTGGGGCCTTCGTTCATTAAAGCTGGGCAGGTTCTTGCCAACAGACCTGATATTATTAGAGAAGATTATATGAATGAACTTTGCATTCTTCAAGACGATGTTCCGTCGTTTCCTAACGAGGTTGCTTTCAGTATCATAGAAGAAGAACTGGGTCGTCCTCTTGAAGCTGTTTTTAGCAAAATTTCGTCACGGACAATAGCAGCAGCAAGTTTGGGTCAAGTTTACCGAGCTACCCTACGAGACTCTGGCGAGGACGTTGCTATCAAGGTTCAAAGGCCTAAGATCGAGCCAATAATATACCAGGATCTTTTTCTTTTTCGTACACTGGCTTCTTTTTTAAATGGCATCAGTCTACAAAAACTTGGTTGTAATGCAGAGCTCATAGTTGATGAATTTGGTGAGAAGCTATTAGAGGAGCTTGACTATACTTTGGAAGCTCGTAACCTTGAGGATTTTATTGAAAACTTCAAAAATGATCCCACTGTAAAAATTCCTCGTGTTTACAAACAACTTTCTGGTTCACGAGTTTTGGTGATGGAATGGATTGATGGTATCCGCTGCACTGACCCACAGGCTATCAAGGATGCTGGCATTGATGTCGATGGATTTTTAACAGTTGGAGTTAGTGCAGCGTTGCGGCAATTGCTAGAATTTGGGTTATTTCATGGTGATCCCCATCCTGGAAACATTTTTGCAATGCGTGATGGACGTATAGCATATGTGGATTTTGGAAATGTTGCTGTGCTCAGTCAGCTAAATAAACAGATCCTGATTGATGCTGTTGTACATGCTGTAAATGAGGATTACGCTGAAATGGCAAATGACTTCACTAGGCTCGGGTTTCTGGCCCCTGGGACAGATGTTGCTCCTATCATTCCGGCATTAGAAGCAATTTGGCAAAATTCTGCTGGGAAAGGGTTATCCGATTTTAATTTCCGAAGTGTCACTGGCAAGTTCAATCAATTGGTCTATAATTATCCTATCCGAATACCTGAGAGGTTTTCTCTTGTTATCCGATCTCTCTTGACTCAAGAGGGAATTTGTTTTACTCTCAAGCCCAACTTCAAATTTCTTGAGGTTGCATATCCATACATTGCAAAGCGCCTTTTGACAGATCCAAACCCTACTTTACGTGAACGCCTCATTCAGGTTTTATTCAAAGATGGAATGTTTCAATGGAAGCGTCTCGAAAATCTTATAGTGCTTGCTAAAGAGAACGTCGTTAAGATGAGCAGTAACCCAGCGTTGCAGAAGAAAGACCTGCAAGGTTCAAGACCAGTTGTCAATAAACTTGACCTCAAAGATACAATCAAAGATGGTGCTCGCCTATTTCTCATCGACGAAGGAATCCGCCGGCAGCTGCTTCTTGCTTTGACTGAAGACTCACAGCTTCACGTGCAAGAGCTCGTCGACGTCTACAGATTACTTGAAGATCAGATAGACATACCATCAATGGCTTTGGAAGTAGCCCGAGATTTTCCATCGGTTGTTCGGGACCTAATGTTGGCTTGGACCGAATCCGTTCTATCAGACAGATAA 1986 42.95 MDFVLANCTHAVSFSAKQRSLKGRSKTVGGRKQRFSVIRITNSAAEFSGSKAASSGDKKDWQVPKSSTALELLDIERGVCIPFRKYSPETVRNKVLESRGAVLSLISRGVEIVWNLGLYWSILMYDCFVGRDEEVVPFRAQQLRKLLCDLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPSFPNEVAFSIIEEELGRPLEAVFSKISSRTIAAASLGQVYRATLRDSGEDVAIKVQRPKIEPIIYQDLFLFRTLASFLNGISLQKLGCNAELIVDEFGEKLLEELDYTLEARNLEDFIENFKNDPTVKIPRVYKQLSGSRVLVMEWIDGIRCTDPQAIKDAGIDVDGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAVLSQLNKQILIDAVVHAVNEDYAEMANDFTRLGFLAPGTDVAPIIPALEAIWQNSAGKGLSDFNFRSVTGKFNQLVYNYPIRIPERFSLVIRSLLTQEGICFTLKPNFKFLEVAYPYIAKRLLTDPNPTLRERLIQVLFKDGMFQWKRLENLIVLAKENVVKMSSNPALQKKDLQGSRPVVNKLDLKDTIKDGARLFLIDEGIRRQLLLALTEDSQLHVQELVDVYRLLEDQIDIPSMALEVARDFPSVVRDLMLAWTESVLSDR* 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15018942 15027599 + Chy3G061670.1 Chy03g01187 223348

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01187 661 Pfam ABC1 atypical kinase-like domain 179 423 IPR004147 -
Chy03g01187 661 ProSiteProfiles Protein kinase domain profile. 209 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g01187 661 PANTHER PROTEIN ACTIVITY OF BC1 COMPLEX KINASE 1, CHLOROPLASTIC 22 661 - -
Chy03g01187 661 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 22 661 - -
Chy03g01187 661 CDD ABC1_ADCK3-like 179 425 - -
Chy03g01187 661 SUPERFAMILY Protein kinase-like (PK-like) 180 398 IPR011009 -
Chy03g01187 661 Gene3D Transferase(Phosphotransferase) domain 1 207 405 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01187 - - - csv:101205089 1278.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01187 Chy-Chr3:15018942 Chy08g01090 Chy-Chr8:18054663 5.08E-125 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g213 Blo01g01345 . Bda01g00706 . . . Bma04g00312 Bma01g02132 . . . Cma05g00634 . . Sed01g1309 . . Bhi04g01074 Tan02g2645 Cmetu03g0988 . Hepe10g0312 . Lcy13g1339 . . . . . . . Cone4ag1851 Cone7ag1756 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g01187 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007163 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01187 Chy_Chr03 FPKM 4.8056 4.842356 90.442757 94.218468 54.867252 56.999123 60.14806 0.534691 0.347194 0.0