Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01188 ATGGATAGTAATCAGTTTGGTTCTAACTGGGATGATGTGATTTGTTCGATTTGCTTGGATTTTCCTCATAATGCTGTACTTCTGCAATGCTCATCGTATGACAAAGGATGTCGCCCCTTTGTATGCGACACGGATCATTTACACTCAAATTGTCTTGATCGTTTTAAAAATGCACATAACACAATTCCTCCATCAACATCTGATGTAGTTCCTCCAATGAACACAGAACCAGTGGCACCAGAAGATGATTGCAAATTATGTTGTCCTTTGTGTAGAGGAGATGTTAGTGGATGGAAGGTGGTTGATGAGGCTCGCATACAGTTGGATGAAAAGAAACGTTATTGTGAGGAAGAACAATGTAGATTTATGGGCACGTATTTGGAATTACAACAACATGCTCAGTCTGAGCATCCTCATGCTCGTCCTTCAAAAATCGACCCTGCTCGACAACTTGATTGGGAAAATTTTCAGCAGTCCTCTGAAATCATCGATGTCTTAAGTACCATCCACTCAGAAGTTCCCCGTGGGGTGGTGTTTGGAGACTATGTGATTGAATATGGAGATGATGAAAGTGGAGATGAGTTTGAGGATTTCCCTGGGGACGATGGCAATTGGTGGACCTCTTGTATCTTGTACCAAGTATTCGATAATTTTAGGAACTCAAGAAATCGAAGGAGGTCAAGAGTTGGTGACACAAGAAGGGGAAATCGCCGTTCAAGTAATGATTTGTCAAATTCAGATGATAGTTCTGTGGCCTCGGTAGAATTTGCAGAGTATGGAGTAGAAGATGATGACGAAATTGTGACTACGAATGTCTCTTCGAGGGGTAGTTCCAACCACAGGAGGTGA 849 42.05 MDSNQFGSNWDDVICSICLDFPHNAVLLQCSSYDKGCRPFVCDTDHLHSNCLDRFKNAHNTIPPSTSDVVPPMNTEPVAPEDDCKLCCPLCRGDVSGWKVVDEARIQLDEKKRYCEEEQCRFMGTYLELQQHAQSEHPHARPSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVFGDYVIEYGDDESGDEFEDFPGDDGNWWTSCILYQVFDNFRNSRNRRRSRVGDTRRGNRRSSNDLSNSDDSSVASVEFAEYGVEDDDEIVTTNVSSRGSSNHRR* 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15030836 15031684 - Chy3G061680.1 Chy03g01188 223349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01188 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 141 IPR013083 -
Chy03g01188 282 MobiDBLite consensus disorder prediction 224 255 - -
Chy03g01188 282 PANTHER OS02G0150900 PROTEIN 3 282 - -
Chy03g01188 282 PANTHER OS01G0612600 PROTEIN 3 282 - -
Chy03g01188 282 Coils Coil 101 121 - -
Chy03g01188 282 Pfam Protein of unknown function (DUF1644) 11 167 IPR012866 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01188 - - - csv:101205331 525.783
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01188 Chy-Chr3:15030836 Chy09g00571 Chy-Chr9:6261985 2.53E-57 dispersed
Chy03g01188 Chy-Chr3:15030836 Chy02g01974 Chy-Chr2:23491179 2.14E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g212 . . . . Bpe02g01620 . . . . Cmo12g00240 . Cma05g00633 . Car12g00272 . Cpe07g00249 . Bhi04g01076 Tan02g2640 . . Hepe10g0313 . Lcy13g1340 . . . . . . . Cone4ag1853 Cone7ag1757 . . . . . . . Blo18g00198 . Bda13g01292 . . Bma01g01308 Bma02g00049 . . . . Cma12g00288 . . . . . . . . . . . . . . . . . . . . Chy03g01188 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002959 2 3 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 8 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01188 Chy_Chr03 FPKM 0.0 0.0 0.0 0.0 0.122702 0.0 0.0 0.0 0.0 0.0