Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01199 ATGACGGCACCGGTGTCGGTTGATGGGAAAGGGAAGAAGAATATTGAGAATTTGGTGTCTGCTACTAGGTCATTGAAGGCTAGCTTAGAGAAATCTAGTGCTTTAGGGTTTTCTTTGCAGAAAGCTGGGCCGAGATTGGAGGAGATTAGGCAAAGATTGCCGACTTTAGAAGCAGCGGTTCGGCCTATTCGTGCTGACAAGGAAGCCCTTGTTGCCGTCGGTGGCCATATAAATCGGGCTGTTGGCCCTGCCGCGGCCGTGCTTAAGGTTTTCGATGCAGTTCATGGCCTTGAAAAATCTCTATTATCGGACCCGCGGAATGATCTTCATGGGTATTTGTCTGTGTTGAAACGTATGGAAGAGGCATTGAGGTTTTTGGGAGATAACTGTGGACTGGCAATCCAGTGGTTGGAGGACATTGTTGAGTATTTGGAAGATAATACTGTTGCTGATGAGAAATATCTAGCGAGTTTGAAGAATTCATTGAAAAATCTTAGGGATTTGCAGAGTGATGAAGGGAGGACTCGGCTTGATGGGGGCCTTCTGAATGCTGCTTTAGATAAACTCGAGAACGAGTTTAGGCGGCTTTTGACGGAGCACAGTGTACCTCTTCCAATGTCTTCTTCGGCGTCTTCAGGTGAACAAGCTTGCATTGCTCCATCCCCATTGCCTGTGACTATCATTCCGAAATTGCAAGCCATTCTTGGGAGATTGATTGCTAATAAACGACTCGAGAGTTGCATATCGATTTATGTTGAAGTTCGTAGTTCTAATGTTAGGGCTAGTTTGCAGGCTCTTGATTTGGATTACTTGGAGATATCTGTTTCTGAGTTCAATGATGTGCTGAGCATCGAAGGGTACATTGCAAAATGGGGAAAGCATTTGGAGTTTGCAGTGAAACACTTGTTTGAGGCCGAGTTCAAGCTTTGTAATGACGTTTTCGAGAGGATTGGATTGGATGTTTGGATGGGGTGTTTTGCAAAGATAGCAACTCAAGCAGGTATTCTTGCATTTCTTCAATTTGGGAAAACTGTAACAGAAAGCAAGAATGATCCTATTAAGCTACTGAAGTTGTTGGATATATTTGCATCCTTGAACAAACTGAGACTAGACTTCAATAGGCTTTTTGGCGGGGCGGCCTGTTTGGAAATTCAAAACTTGACTAGGGATCTCATTAAGCGGGTTATTGATGGTGCGGCCGAGATTTTCTGGGAACTTTTAGTTCAGGTGGAGCTGCAGAGGCAAAATTCTCCACCTTTAGATGGGGGAGTTCCACGATCGGTTAGCTTCATTATTGATTACAGTAACAAACTACTCAGTGACGATTATCGGCCGATCTTGACCCAGGCCCTCGTCATTCACCGAAGTTGGAAGAAAGAAAAGTTCCAAGAGCGTCTACTTGTCAGTGAGGTAACGAACCTTGTTAAAGCTATTGAGCATAATCTTGAAACTTGGATAAAGGCTTATGAAGATTCTACCTTGTCAAACTTTTTCGCTATGAACAATCATTGGCATCTATACAAGCACCTCAAAGGAACAAAAGTCGGAGAACTAATGGGAGATAAACTAAAGGAACATGAACAATACAAGGATTTCTATGCTGCAGTTTTCTTGAGGGAGAGCTGGACTAAACTTCCTAGCCATTTAAGCAGAGAGGGTTTGATAATGTTCTCGGGTGGCCGAGCTACTGCTCGTGATCTTGTCAAGAAACGTCTAAAGACATTCAATGAAGCTTTTGAAGACATGTATAAGAAGCAGTCAAACTGGGTTATGACTGACAAAGAGTTGAGGGAGAAGACATGTCAACTTATAGTTCAAACCATCGTACCCGTTTATCGCAGTTACATGCAGAATTACGGCCCCTTGGTCGAGCAAGACGCGAGTTCCAGTAAGTATGTGAAGTACACCGTGCAGAATCTGGAGAAAATGTTACTGTCCCTATTTCAGCCAAAGCCACTTAGGCACAGTAGTCTTAAAGTTAGGCAGACCAGTGGGAAATTCAGCAATGGCGCAGCAGATCATCGTCGTTCCAACTCCATGGTTATGTAA 2049 43.78 MTAPVSVDGKGKKNIENLVSATRSLKASLEKSSALGFSLQKAGPRLEEIRQRLPTLEAAVRPIRADKEALVAVGGHINRAVGPAAAVLKVFDAVHGLEKSLLSDPRNDLHGYLSVLKRMEEALRFLGDNCGLAIQWLEDIVEYLEDNTVADEKYLASLKNSLKNLRDLQSDEGRTRLDGGLLNAALDKLENEFRRLLTEHSVPLPMSSSASSGEQACIAPSPLPVTIIPKLQAILGRLIANKRLESCISIYVEVRSSNVRASLQALDLDYLEISVSEFNDVLSIEGYIAKWGKHLEFAVKHLFEAEFKLCNDVFERIGLDVWMGCFAKIATQAGILAFLQFGKTVTESKNDPIKLLKLLDIFASLNKLRLDFNRLFGGAACLEIQNLTRDLIKRVIDGAAEIFWELLVQVELQRQNSPPLDGGVPRSVSFIIDYSNKLLSDDYRPILTQALVIHRSWKKEKFQERLLVSEVTNLVKAIEHNLETWIKAYEDSTLSNFFAMNNHWHLYKHLKGTKVGELMGDKLKEHEQYKDFYAAVFLRESWTKLPSHLSREGLIMFSGGRATARDLVKKRLKTFNEAFEDMYKKQSNWVMTDKELREKTCQLIVQTIVPVYRSYMQNYGPLVEQDASSSKYVKYTVQNLEKMLLSLFQPKPLRHSSLKVRQTSGKFSNGAADHRRSNSMVM* 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15123967 15126015 - Chy3G061790.1 Chy03g01199 223360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01199 682 Pfam Exo70 exocyst complex subunit 290 645 IPR046364 GO:0000145|GO:0005546|GO:0006887
Chy03g01199 682 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 14 671 - -
Chy03g01199 682 SUPERFAMILY Cullin repeat-like 87 648 IPR016159 -
Chy03g01199 682 Gene3D Exocyst complex component Exo70 136 656 - -
Chy03g01199 682 PANTHER EXOCYST COMPLEX PROTEIN EXO70 14 671 IPR004140 GO:0000145|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01199 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101207478 1310.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02114 Chy-Chr1:25847708 Chy03g01199 Chy-Chr3:15123967 0 dispersed
Chy03g01199 Chy-Chr3:15123967 Chy03g01600 Chy-Chr3:17959302 5.75E-70 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g146 . . . . Bpe02g01556 . . . Cmo05g00427 Cmo12g00250 . . . . . . . Bhi04g01088 . . . . . . . . . . . . . . . Cone17ag0940 Cone20ag0283 . . . . . Blo18g00262 Bda01g01344 Bda13g01302 . . Bma01g00913 . . . . . . . Car05g00351 Cpe11g00355 . . . . . . . . Cla08g00991 Cam08g1437 Cec08g1016 Cco08g1139 Clacu08g1142 . Cre08g0927 Lsi08g00836 . Chy03g01199 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy10g01231 . 14 652 EXO70 exocyst subunit family AT5G03540 76.7 1.0e-285 979.2
Chy08g00976 . 1 640 EXO70 exocyst subunit family AT5G03540 70.9 2.3e-264 908.3
Chy08g00976 . 1 640 EXO70 exocyst subunit family AT5G52340 80.0 1.9e-297 1018.1
Chy10g01231 . 16 652 EXO70 exocyst subunit family AT5G52340 74.4 1.1e-271 932.6
Chy08g00976 . 145 632 EXO70 exocyst subunit family AT5G52350 63.2 1.2e-173 606.7
Chy10g01231 . 151 652 EXO70 exocyst subunit family AT5G52350 60.6 5.4e-169 591.3
Chy12g00323 . 1 630 EXO70 exocyst subunit family AT5G58430 66.3 4.9e-245 844.0
Chy12g00323 . 1 629 EXO70 exocyst subunit family AT1G07000 52.0 8.8e-175 610.5
Chy07g01488 . 60 673 EXO70 exocyst subunit family AT5G13150 53.0 1.1e-173 607.1
Chy04g00756 . 12 611 EXO70 exocyst subunit family AT1G72470 64.5 2.7e-214 741.9
Chy04g00756 . 9 607 EXO70 exocyst subunit family AT1G54090 62.0 3.7e-208 721.5
Chy04g00756 . 9 608 EXO70 exocyst subunit family AT3G14090 64.1 1.0e-218 756.5
Chy12g01170 . 18 656 EXO70 exocyst subunit family AT5G50380 62.0 1.7e-227 785.8
Chy02g01759 . 13 651 EXO70 exocyst subunit family AT5G50380 61.8 8.1e-225 776.9
Chy03g01199 . 13 683 EXO70 exocyst subunit family AT4G31540 73.1 5.9e-292 1000.0
Chy10g00590 . 58 601 EXO70 exocyst subunit family AT3G55150 51.1 9.4e-151 530.8
Chy11g01268 . 30 595 EXO70 exocyst subunit family AT3G55150 50.3 3.4e-148 522.3
Chy10g00590 . 27 601 EXO70 exocyst subunit family AT2G39380 51.5 2.2e-155 546.2
Chy04g02117 . 27 633 EXO70 exocyst subunit family AT3G09520 54.6 4.4e-177 618.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005903 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01199 Chy_Chr03 FPKM 1994.450806 2213.828857 347.037872 352.371857 527.187195 514.238953 480.974243 115.780815 115.697777 110.373093