Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01228 ATGGAAGCTGACAGAATGGAGAAAGAACAGCAGCGGACTACCAGGAAAAGGCCTCGTTCCGCATGGGACGTGGTGCCACCCGCACAAGAGGCTAATAAGGATTTGGCGGTGGTTAAGAACGAGGTCAAAAGGCATGCATCTCCCCCGAGAAGAGATGATGATCGAGAAGGACATTATGTCTTCAACCTTGGCGAGAATCTCACTCCGAGATATAAAATCCTCAGCAAGATGGGTGAAGGCACATTTGGTCGAGTTTTGGAATGCTGGGACCGTCAAACTCGAGAATATGTAGCCATCAAGGTAGTTCGGAGCATACGTAAATATCGTGATGCAGCTATGGTCGAGGTGGACATACTTAAACATCTTGCTCAGAATGAAATGGGCAGCTTACATTGTGTGCAGATTAGAACTTGGTTTGACTACCGCAATCACATATGCATAGTATTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGACCTTGTTCGGGAGTTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGATTTACACTTAATCCACACAGACCTGAAGCCAGAAAATATACTTCTTGTGTCTTCTGAATATATAAAGCTTCCTGGTTGTAAGAGGGTTTCGTCAGATGAAACGCAATTCAGATGCTTGCCCAAGTCTAGTGCAATTAAGCTGATTGATTTTGGTAGTACTGCATTTGATAATGAGAATCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCCCCTGAGGTTATTCTAGGTCTCGGGTGGAGTTATCCATGCGATTTGTGGAGTATCGGTTGCATTCTTGTTGAACTCTGTTCGGGCAAAGCATTGTTCCAAACTCACGAGAACTTGGAACATTTGGCAATGATGGAGAGGGTGTTGGGACCTCTTCCAGGGCACATGATTCAGAGTGCCGACCAAAACGCCGAAAAATATTTCAAACGAGGGTTGCGTCTTAACTGGCCCGAAGGAGCAGTTTCAAGAGAAAGCATTAGAGCTGTGAAGAAGCTTGATCGATTGAAGGATATGGTTTCACAATATGTGGGTTTCTCGAGGTCTCTACTGACTGATCTGTTGTATGATTTATTGAAATATGACCCTTCGGAACGTCCGACCGCCCGACAAGCACTTAATCATCCCTTCTTTAAGAGTATAGCTTGA 1203 44.14 MEADRMEKEQQRTTRKRPRSAWDVVPPAQEANKDLAVVKNEVKRHASPPRRDDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTREYVAIKVVRSIRKYRDAAMVEVDILKHLAQNEMGSLHCVQIRTWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHDLHLIHTDLKPENILLVSSEYIKLPGCKRVSSDETQFRCLPKSSAIKLIDFGSTAFDNENHSSIVSTRHYRAPEVILGLGWSYPCDLWSIGCILVELCSGKALFQTHENLEHLAMMERVLGPLPGHMIQSADQNAEKYFKRGLRLNWPEGAVSRESIRAVKKLDRLKDMVSQYVGFSRSLLTDLLYDLLKYDPSERPTARQALNHPFFKSIA* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15358879 15362665 - Chy3G062080.1 Chy03g01228 223389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01228 400 CDD PKc_CLK 58 396 - -
Chy03g01228 400 MobiDBLite consensus disorder prediction 1 57 - -
Chy03g01228 400 MobiDBLite consensus disorder prediction 36 57 - -
Chy03g01228 400 SUPERFAMILY Protein kinase-like (PK-like) 58 399 IPR011009 -
Chy03g01228 400 Gene3D Phosphorylase Kinase; domain 1 58 151 - -
Chy03g01228 400 Gene3D Transferase(Phosphotransferase) domain 1 125 396 - -
Chy03g01228 400 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 40 397 - -
Chy03g01228 400 ProSiteProfiles Protein kinase domain profile. 71 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g01228 400 Pfam Protein kinase domain 71 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g01228 400 PANTHER BNAA07G37640D PROTEIN 40 397 - -
Chy03g01228 400 SMART serkin_6 71 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g01228 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Chy03g01228 400 MobiDBLite consensus disorder prediction 1 19 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01228 K08287 E2.7.12.1; dual-specificity kinase [EC:2.7.12.1] - csv:101210171 799.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01228 Chy-Chr3:15358879 Chy04g02123 Chy-Chr4:26514044 0 dispersed
Chy11g00864 Chy-Chr11:12089685 Chy03g01228 Chy-Chr3:15358879 3.54E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g364 . . . . Bpe02g01198 . . . Cmo05g00634 . . Cma05g00608 . . Sed01g1289 . . Bhi04g00814 Tan02g2583 Cmetu03g0841 . Hepe10g0340 . Lcy13g1385 . . . . . . . . . . Cone20ag0616 . . . Cme03g01723 . Blo18g00067 Bda01g00951 . . . Bma01g01330 . . . . . . . Car05g00551 Cpe11g00531 . . . . . . . . Cla08g01240 Cam08g1698 Cec08g1277 Cco08g1399 Clacu08g1394 . Cre08g1180 Lsi08g01102 . Chy03g01228 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009152 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71140 PF00069 Pkinase 1.00E-51 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01228 Chy_Chr03 FPKM 54.308876 58.17408 31.618528 29.81348 37.962402 40.818836 39.339577 22.083555 21.856592 19.037138