Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01245 ATGGCCAGAATTGCAATTGGAAGCATCCATGAGGCCTCCCAGCCCGATTGCATCCGAGCCCTCATAGTCGAGTTTATTGTCACTTTCCTTTTCGTCTTTGCTGGTGTCGGATCAGCCATGGCTGCCAATGCGTTATTGGCAAATGCACTCGTCGGTTTATTCGCTGTAGCAGTTGCACATGCGTTTGTTGTGGCTGTGATGATCTCTACTGGCCACATTTCCGGTGGCCACCTCAACCCTGCTGTCACTCTTGGTCTACTTTTCGGTGGCCACATCACAGTCGTTAGATCTGCTCTATATTGGATTATTCAGTTGCTAGCAGCATCAGCAGCCAGCTTCTTGTTAACGTACCTCACAGGAGGCTTGGTCACTCCAATTCACACGTTAGCAAGTGGGGTTGGGTATCTTCAGGGAGTGATATGGGAGATTATTCTGACCTTCTCCTTGCTTTTCACTGTATATGGTACAATTGTTGACCCAAAAAAGGGGGCTCTTGATGGGCTGGGTCCAATGCTGACTGGGTTTGTGGTGGGGGCCAACATCTTGGCTGGTGGAGCTTTTTCAGGAGCTTCAATGAACCCAGCAAGATCATTTGGGCCTGCTTTGGTGGCTGGAGACTGGACTGACCATTGGGTTTACTGGGTTGGGCCTCTTATTGGTGGTGGGCTTGCTGGATTCATCTATGAAAACTTCCTCATTCAAAGATCTCATGTCCCTCTACCTAGGGAGGAAGATGGCTATTAG 744 49.33 MARIAIGSIHEASQPDCIRALIVEFIVTFLFVFAGVGSAMAANALLANALVGLFAVAVAHAFVVAVMISTGHISGGHLNPAVTLGLLFGGHITVVRSALYWIIQLLAASAASFLLTYLTGGLVTPIHTLASGVGYLQGVIWEIILTFSLLFTVYGTIVDPKKGALDGLGPMLTGFVVGANILAGGAFSGASMNPARSFGPALVAGDWTDHWVYWVGPLIGGGLAGFIYENFLIQRSHVPLPREEDGY* 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15524638 15525754 + Chy3G062250.1 Chy03g01245 223406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01245 247 SUPERFAMILY Aquaporin-like 11 241 IPR023271 -
Chy03g01245 247 PANTHER AQUAPORIN-8 2 245 IPR034294 -
Chy03g01245 247 ProSitePatterns MIP family signature. 77 85 IPR022357 -
Chy03g01245 247 Gene3D Glycerol uptake facilitator protein. 2 242 IPR023271 -
Chy03g01245 247 Pfam Major intrinsic protein 12 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy03g01245 247 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy03g01245 247 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy03g01245 247 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy03g01245 247 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy03g01245 247 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy03g01245 247 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy03g01245 247 PANTHER AQUAPORIN TIP4-1 2 245 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01245 Chy-Chr3:15524638 Chy09g01079 Chy-Chr9:13139000 3.07E-78 dispersed
Chy03g01245 Chy-Chr3:15524638 Chy04g02024 Chy-Chr4:25910361 1.34E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01245 K09873 - csv:101205380 445.662