Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01248 ATGAAGAAGGCAACTTACAGAGGAGTTCGAATGAGAAATTGGGGGAAATGGGTATCGGAAATTCGAGAACCAAGAAAGAAATCCCGCATTTGGTTAGGTACTTTCCCCAGTCCTGAAATGGCTGCTCGAGCTCATGATGTTGCTGCTCTAAGCATCAAAGGAAATTCCGCCATTCTTAATTTCCCTGATCTTGTTCATCTTCTTCCTCGCCCTGTTTCTCTTGCTCCTCGTGATGTTCAAGCTGCTGCTGCTAAAGCTGCTCACATGCATAATCTTTCATCTAATGTTAATACTAACAACCATAATACTAATTCTAATTCCTCCTCTGCCTTCTCCGATGAACTTAGTGAGATTGTTGAGTTGCCGGCTCTGGGAACGAGTTACGACGAGGGTGTTGGTGTTGGTGGGGAGTTTGTGTTTGTTGAGTCGGAAATGGAATCGGCGGCTTGGCTTTACCCGCCGCCGTGGGTGCAGAGCTTAGAGGAGGATTATGATGATGGAGATGGAGATGGAGATTGTGGTAAGTTGGGAATGGGATTTGTTTCCAATGGATTTAAAGGGTTTTTGTTTGATTATTGA 579 44.73 MKKATYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDVQAAAAKAAHMHNLSSNVNTNNHNTNSNSSSAFSDELSEIVELPALGTSYDEGVGVGGEFVFVESEMESAAWLYPPPWVQSLEEDYDDGDGDGDCGKLGMGFVSNGFKGFLFDY* 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15543641 15545988 + Chy3G062280.1 Chy03g01248 223409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01248 192 PRINTS Ethylene responsive element binding protein signature 6 17 IPR001471 GO:0003700|GO:0006355
Chy03g01248 192 PRINTS Ethylene responsive element binding protein signature 28 44 IPR001471 GO:0003700|GO:0006355
Chy03g01248 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 112 188 - -
Chy03g01248 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 108 - -
Chy03g01248 192 ProSiteProfiles AP2/ERF domain profile. 5 62 IPR001471 GO:0003700|GO:0006355
Chy03g01248 192 PANTHER DREB-LIKE PROTEIN 112 188 - -
Chy03g01248 192 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Chy03g01248 192 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Chy03g01248 192 Gene3D AP2/ERF domain 5 63 IPR036955 GO:0003700|GO:0006355
Chy03g01248 192 SMART rav1_2 5 68 IPR001471 GO:0003700|GO:0006355
Chy03g01248 192 SUPERFAMILY DNA-binding domain 5 63 IPR016177 GO:0003677
Chy03g01248 192 PANTHER DREB-LIKE PROTEIN 2 108 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01248 Chy-Chr3:15543641 Chy04g00152 Chy-Chr4:1356186 7.48E-53 dispersed
Chy03g01248 Chy-Chr3:15543641 Chy02g01885 Chy-Chr2:21702613 9.58E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17719 PF00847 AP2 2.30E-13 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01248 K09286 - csv:101206242 301.597