Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01250 ATGGGTTCGCTCCAAGCATTTGGAGTAATCCTTAAAAGATTCTCCCTAAATTCGATCATTCACAAATCTCTCCGTTTCTTCCATCCTCACAGTAATGGGTTGTGTTTGTCATCATCATTGGCTGCCGTAACATCAAGTTCTCCTTTGTGGGCTTTTGATAGTAAGCTGAAAAGTCGTGGTAATCAAGTGCGAAGGATATGGATGTCTCCGGTTTGTATGGGCAGGCGTTCCTGCAAGATTGCTGGCAGGAAGGGTGCTCAGGATGCAAAGAAGGCAAAGCTTTATGCTAGGATTGGAAAGGAGGTTGTTTCTGCCTGTAAAAGGGGAGGAACAAACCCCACATCCAATCCCCTTCTGACTACCCTACTTGAGAAAATTAAGGAGCTTGATATTCCAAAAGAAATTTTTGATCGCAACATTAAGAGGGCTTCTGAGAAAGGACAAGAGGCTTACATAGAGAAAACTTACGAGGTATATGGTTATGGTGGTGCTAGTATGGTTGTTGAGGTCTCAACAGATAAGGTAAATCGCTCAGTGGCAGCAGTTAGAGAAGTATTGAAGGACTATGGTGGAAAGATGGCAGATTCAGGATCTGTTATGTTCAAGTTCAGACGTGCTCGAGTTGTGAATGTTAAGGCCTCTAACGTTGACAAAGACCAGCTTCTCAACATATCTCTAGATGCTGGTGCAGAAGATGTTGTTGAACCTCCCGAATATGAAGATGATACAGAAGAAGATAAGTCGGAAAGATATTACAAAATTGTGACTTCCACGGAGAACTACTCAGGAATACTATCCAAGTTACGTGAAGAAAACATAAAGTTTGAAACTGACGGTGGTTCTGAGCTACTTCCTATAAGCTCTATTGAGGTGGATGATGAAGCTATGGATTTGAATAAAGAACTAATGGACAAGTTGCTTGAACTCGATGATGTCGATGCAGTTTATACTGATCAAAAGTGA 963 41.74 MGSLQAFGVILKRFSLNSIIHKSLRFFHPHSNGLCLSSSLAAVTSSSPLWAFDSKLKSRGNQVRRIWMSPVCMGRRSCKIAGRKGAQDAKKAKLYARIGKEVVSACKRGGTNPTSNPLLTTLLEKIKELDIPKEIFDRNIKRASEKGQEAYIEKTYEVYGYGGASMVVEVSTDKVNRSVAAVREVLKDYGGKMADSGSVMFKFRRARVVNVKASNVDKDQLLNISLDAGAEDVVEPPEYEDDTEEDKSERYYKIVTSTENYSGILSKLREENIKFETDGGSELLPISSIEVDDEAMDLNKELMDKLLELDDVDAVYTDQK* 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15593375 15599042 - Chy3G062300.1 Chy03g01250 223411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01250 320 Pfam Transcriptional regulator 78 318 IPR002876 -
Chy03g01250 320 PANTHER TRANSLATIONAL ACTIVATOR OF CYTOCHROME C OXIDASE 1 35 320 - -
Chy03g01250 320 Gene3D - 202 287 IPR026564 -
Chy03g01250 320 SUPERFAMILY YebC-like 73 319 IPR029072 -
Chy03g01250 320 Hamap Probable transcriptional regulatory protein YebC [yebC]. 73 320 IPR002876 -
Chy03g01250 320 Gene3D - 154 317 IPR026564 -
Chy03g01250 320 Gene3D - 76 150 IPR017856 -
Chy03g01250 320 PANTHER UNCHARACTERIZED 35 320 IPR002876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01250 - - - csv:101217059 571.237
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g290 . . . . . . . . Cmo05g00617 . . Cma05g00592 . . . . . Bhi04g00849 . . . . . Lcy13g1417 . . . . . . . . . Cone17ag1125 Cone20ag0597 . . . Cme03g01745 Blo17g00068 . . Bda13g01331 Bpe14g00517 . . . . . . . . . Car05g00536 Cpe11g00518 . . . . . . . . Cla08g01221 Cam08g1680 Cec08g1258 Cco08g1378 Clacu08g1378 . Cre08g1163 Lsi08g01084 . Chy03g01250 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006621 1 7 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01250 Chy_Chr03 FPKM 10.432653 10.38998 20.992533 21.192356 15.250774 15.320605 16.32299 19.661203 19.705959 17.941385