Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01253 ATGGAGTCTGTTGCCTCTACTTCATCCCCTCATTCCGTTCCTCGGTTCAAGCCCTCCCAACTTGTGGCCGATAGGATAGTTCGAGCCCTCCACCATCACCTCCGTCTCCTTCACCGCTCCGGTTCTAATTTCTTCGTGTTGGGAGCCACAGGCAATGTTTACATTGTGTCTCTATCCTCCACCCCCTCCTGCACTTGCCCCGACCGTATTAACCCATGCAAACACATATTGTTTATCTACCTTCAGGCCCTGGGTTTGTCGGTTGATGACGTATGTCTTCGGCGAAGAACACTGCGTCCTTGCCAATTGAATCGTTTGCTCGCTGCACCCATTATGTTAAAATCCCTTGCTGAAATTGGGTTACGTAAAGTATTTCATCAACAATTCTTTCAGGTAAACGATAGAGCAGCATCTTCTTCTTCTGTAACCGTTGAAGATATGGAAGATGGTAGTGCTTGTCCAGTTTGTTTGGATGATATGAAGAAGAAGGATCGGGTTGTGGCTTGTTCGACGTGTCGGAATCTTGTTCATGAAGATTGCTTCACGAGGTGGAAACGGAGCAAGGGAAGGAGAAATGCGATGGAGGAGTCCGGAACTCGACCTTCTTCCGGTAAGTTGTCTGGTAAAGTCGTCGCAATTGCCGCCGGTGAAGCTCACACTCTCGTTCTCACAGGAGATGGCAGAGTGTATTCGTGGGGAAGAGGAATGTTTGGGCGGCTCGGGACGGGTGCGGAATCGGATGAGCTGTTCCCTGTTCGAGTTAAGCTTGGTTCGGGGGAAGAGAATCTCAAAGTTGTGGCAATTGCTGCTGGTTCTTATCATAGCCTCGCTCTTGCTGATGATGGTTCGGTTTGGTGCTGGGGTTACAATATCTATGGCCAACTTGGATTTGATGGCGGGAATTCCTCCACCCCCTGCTTGCTGAAGCAGTTCCTTGAGTTGGAACCTCCAGAATCTTTGACAGAACAATCAGGCTCAAAGAGTAAGGGATCACTAAAGATTTGTGACATCAAAGCTGGGGGGCAGATTTCTTTTGCAATTGACGATCTTGGAGCACTATGGATGTGGGGTAATTGTCCAAAACCAATCGGTGAGAATGAAGTTAGCTTATCTTATGTTAGCAGCTTCACACCCTCTCCAGTGTGGGAGTTCCATGGCCATACCGTTGTTAAGGTTGCTTGTGGAAATGAGCATATCGTGGCTCTAGTTAGTGTTGGGGAAACCTACAATAAAGCTGAAGACTTAGTTTGCTACTCCTGGGGAGATAATTCTCACGGTCAATTAGGCCTGGGAGATAAAGATAGCAGAGCACGCCCCCAAATTATCGAGACATTTAATGAGGCTTCCCCTTGGGCAGTGTACGAAGTAGCATGCGGGGCATTCCATACTGCTTTAATAAGTCACAGTAAGAGACCATGTGATACCTTAGAAAGTGTGTGTTGGACATTTGGTCTGGGGGAAAATGGACAGCTTGGGCATGGCACCACCCAAAATGAATTCCTTCCTCAGCCTGTAAAAGAGTTGCCACAGTCTGTATCTCTGATCTCAGTCAATTGTGGCCTATTTCATACAAGTGTTGTTTCATCAGGTGGAGATCTGTGGTCTTGGGGAATGGAAAGGGGACTTGGCCTTTGTCCAGATGCTAGTTTTACTGGAACCAACACGGGCGATGCTATATCTCCCCTATCCATCTTCTGTAGTGGCACTGAATCACCAAATTTTTTGGATCCTGTTCAAGTTGCTTGTGGGGCTGCTCATACTGTTATAGTTGCACATGATGGATATAAATTGTGGTCGTGGGGACGAGGAAGAAGCGGGGTTCTTGGTAATGGTAAGGCAGTCGACTGTTTTACTCCCACAGTTGTGTTGTGGCCTCCACTTAATGAGGATTTCGATCAAGAGGAAACTGAAACCAAATGCGAGGAAGATAAAGTTGAAGAAAATAAAACCGAGGAAGATAAAGTTGAAGAAAATAAAGCCGAGGAAGTTAAAGTTGAAGAAAATAAAATCGGGGAAGTAACCGAAGAAAACAAAAAGCTGTTAATAGCTATGGAGGAAATAAAACTTCTTCTAGAGAAATTCTCTATCATGGAACGGTATGCAAGCTTTCTTCATGGCTCAATATTTGGAAAACCTTTCCAAGAGGGAGATATCCCACTCTCATTGCGAAATTCTGGTTCCTTCGACATTGCTAAGGAATGGGAAAACATGTTGGAGTCATCAGATCGATCAAATCTTTTAAGGTTGGAGATGGTTTATCAAAATATGCTGGCAAGTATTAAAGACAAAATATTGAAGAAAAGGGTCCAGGAACTTGTGAAAGAGTTTCTTCAATCAGCAACACCCCCAAATTAG 2355 45.39 MESVASTSSPHSVPRFKPSQLVADRIVRALHHHLRLLHRSGSNFFVLGATGNVYIVSLSSTPSCTCPDRINPCKHILFIYLQALGLSVDDVCLRRRTLRPCQLNRLLAAPIMLKSLAEIGLRKVFHQQFFQVNDRAASSSSVTVEDMEDGSACPVCLDDMKKKDRVVACSTCRNLVHEDCFTRWKRSKGRRNAMEESGTRPSSGKLSGKVVAIAAGEAHTLVLTGDGRVYSWGRGMFGRLGTGAESDELFPVRVKLGSGEENLKVVAIAAGSYHSLALADDGSVWCWGYNIYGQLGFDGGNSSTPCLLKQFLELEPPESLTEQSGSKSKGSLKICDIKAGGQISFAIDDLGALWMWGNCPKPIGENEVSLSYVSSFTPSPVWEFHGHTVVKVACGNEHIVALVSVGETYNKAEDLVCYSWGDNSHGQLGLGDKDSRARPQIIETFNEASPWAVYEVACGAFHTALISHSKRPCDTLESVCWTFGLGENGQLGHGTTQNEFLPQPVKELPQSVSLISVNCGLFHTSVVSSGGDLWSWGMERGLGLCPDASFTGTNTGDAISPLSIFCSGTESPNFLDPVQVACGAAHTVIVAHDGYKLWSWGRGRSGVLGNGKAVDCFTPTVVLWPPLNEDFDQEETETKCEEDKVEENKTEEDKVEENKAEEVKVEENKIGEVTEENKKLLIAMEEIKLLLEKFSIMERYASFLHGSIFGKPFQEGDIPLSLRNSGSFDIAKEWENMLESSDRSNLLRLEMVYQNMLASIKDKILKKRVQELVKEFLQSATPPN* 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15617544 15621801 - Chy3G062330.1 Chy03g01253 223414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01253 784 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 227 281 IPR000408 -
Chy03g01253 784 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 197 780 - -
Chy03g01253 784 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 531 593 IPR000408 -
Chy03g01253 784 ProSiteProfiles Zinc finger SWIM-type profile. 54 84 IPR007527 GO:0008270
Chy03g01253 784 Gene3D - 192 410 IPR009091 -
Chy03g01253 784 SUPERFAMILY RING/U-box 146 190 - -
Chy03g01253 784 SUPERFAMILY RCC1/BLIP-II 216 629 IPR009091 -
Chy03g01253 784 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 392 402 IPR000408 -
Chy03g01253 784 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 478 530 IPR000408 -
Chy03g01253 784 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 191 IPR013083 -
Chy03g01253 784 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 268 278 IPR000408 -
Chy03g01253 784 Pfam Regulator of chromosome condensation (RCC1) repeat 481 526 IPR000408 -
Chy03g01253 784 Pfam Regulator of chromosome condensation (RCC1) repeat 281 347 IPR000408 -
Chy03g01253 784 Pfam Regulator of chromosome condensation (RCC1) repeat 418 466 IPR000408 -
Chy03g01253 784 Pfam Regulator of chromosome condensation (RCC1) repeat 226 278 IPR000408 -
Chy03g01253 784 CDD RING-H2 153 191 - -
Chy03g01253 784 Pfam Ring finger domain 152 188 IPR001841 -
Chy03g01253 784 Coils Coil 648 668 - -
Chy03g01253 784 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 415 469 IPR000408 -
Chy03g01253 784 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 197 780 - -
Chy03g01253 784 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 351 405 IPR000408 -
Chy03g01253 784 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 282 350 IPR000408 -
Chy03g01253 784 Gene3D - 411 681 IPR009091 -
Chy03g01253 784 PRINTS Chromosome condensation regulator RCC1 signature 392 408 IPR000408 -
Chy03g01253 784 PRINTS Chromosome condensation regulator RCC1 signature 284 300 IPR000408 -
Chy03g01253 784 PRINTS Chromosome condensation regulator RCC1 signature 520 538 IPR000408 -
Chy03g01253 784 PRINTS Chromosome condensation regulator RCC1 signature 228 244 IPR000408 -
Chy03g01253 784 PRINTS Chromosome condensation regulator RCC1 signature 590 611 IPR000408 -
Chy03g01253 784 PRINTS Chromosome condensation regulator RCC1 signature 265 278 IPR000408 -
Chy03g01253 784 MobiDBLite consensus disorder prediction 632 654 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01253 - - - csv:101217770 1137.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01253 Chy-Chr3:15617544 Chy08g00389 Chy-Chr8:9261129 2.23E-18 dispersed
Chy03g01253 Chy-Chr3:15617544 Chy05g00160 Chy-Chr5:1242363 2.56E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g285 . . . . . . . . . Cmo12g00200 . . . Car12g00233 . Cpe07g00211 . . . . . . . . . . . . . . . . . . . . . . Cme03g01749 Blo17g00065 . . Bda13g01328 . . . . . . . . Cma12g00248 . . . . . . . . . . . Cla08g01218 Cam08g1677 Cec08g1255 Cco08g1375 Clacu08g1375 . Cre08g1160 Lsi08g01081 . Chy03g01253 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009895 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01253 Chy_Chr03 FPKM 24.377119 29.154186 23.689821 24.329992 28.20121 31.32016 27.293859 28.313398 29.295149 28.871145