Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01261 ATGGAAGCTCCTGAATATTTCCAGATCAATGCCTACTCCTCTCAATTCTCCTCCGCCGACGACACCGATGCCACCACCACCGCCGCCGCTGCCGCTGCACCCGACCATTTCATCGTCGAGGAGCTTCTCGATTTCTCCAACAACGAAGATGACGCCGTCCTTACTGACTCTGGAGGTGGAGGAGGAGGAGGAGGATTGTTTTACAACAACAATAATACTTCTACTAATGATCATAGCAATAACAATAATTCAACGGAATCTTCCGCCGTTACCGTGATGGAGAGTTGCAATTCCTCATCCTCCTTTTTTGAAGATATCAGTGGCTCTAATTTAGGCGATGCCCATTTCTCCAGCGAACTCTGCGTTCCGTATGACGATTTAGCTGAGCTGGAATGGCTTTCAAACTTTGTAGAGGAATCATTTTCCAGCGAGGACATGCAAAAGTTAGAACTCATCTCCGGAGTCAAAGTCAAATCCGACGAACCCCCCACTCAATCCCCACAACCCACGGCCACCCGAACCGCAGCAGCAATTTTCAAACCGGAAATTGTTTCCGTTCCGGCTAAAGCCCGCAGCAAACGCTCACGTGCCCTCCCATCTAATTGGAACAACTCCGCCCTCCTTCCTCTTTCTTCTCCTACTGCCGAACCCGAAATTACAGCACCCATCGAACAACCACATCCCATTAAAAAAACCCTTCCCAAGGCGGCAGCTACGGCTAAGAAGAAGGACAGTCCAGAGTTAGGATTTTCATCCGGAGAGGGGCGTAAGTGCATGCACTGTGCCACCGACAAGACACCCCAGTGGCGGACTGGCCCAATGGGCCCAAAAACATTGTGTAATGCTTGTGGGGTTCGGTACAAATCCGGCCGCTTGGTACCGGAGTATCGCCCTGCCGCAAGCCCCACCTTTGTTTTAACGAAACACTCTAATTCTCACCGGAAAGTTTTGGAGCTTCGGCGACAAAAGGAGATTCTTAGAGCCCAACAACAGCAACAACAGCATTTGCTTTTGGATCATCGTCAAGATATGATCTTTGATGCATCAAACGGTGATGATTATCTCATTCATCAACATGTGGGGCCCGATTTCCGGCAGCTGATCTGA 1107 49.77 MEAPEYFQINAYSSQFSSADDTDATTTAAAAAAPDHFIVEELLDFSNNEDDAVLTDSGGGGGGGGLFYNNNNTSTNDHSNNNNSTESSAVTVMESCNSSSSFFEDISGSNLGDAHFSSELCVPYDDLAELEWLSNFVEESFSSEDMQKLELISGVKVKSDEPPTQSPQPTATRTAAAIFKPEIVSVPAKARSKRSRALPSNWNNSALLPLSSPTAEPEITAPIEQPHPIKKTLPKAAATAKKKDSPELGFSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEILRAQQQQQQHLLLDHRQDMIFDASNGDDYLIHQHVGPDFRQLI* 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15664740 15666454 + Chy3G062410.1 Chy03g01261 223422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01261 368 MobiDBLite consensus disorder prediction 64 85 - -
Chy03g01261 368 Pfam GATA zinc finger 258 291 IPR000679 GO:0006355|GO:0043565
Chy03g01261 368 PANTHER GATA TRANSCRIPTION FACTOR 1 368 - -
Chy03g01261 368 ProSiteProfiles GATA-type zinc finger domain profile. 252 288 IPR000679 GO:0006355|GO:0043565
Chy03g01261 368 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 254 316 - -
Chy03g01261 368 CDD ZnF_GATA 257 304 IPR000679 GO:0006355|GO:0043565
Chy03g01261 368 SMART GATA_3 252 302 IPR000679 GO:0006355|GO:0043565
Chy03g01261 368 ProSitePatterns GATA-type zinc finger domain. 258 283 IPR000679 GO:0006355|GO:0043565
Chy03g01261 368 Gene3D - 251 302 IPR013088 GO:0006355|GO:0008270
Chy03g01261 368 PANTHER GATA TRANSCRIPTION FACTOR 1 368 - -
Chy03g01261 368 PIRSF Txn_fac_GATA_plant 17 59 IPR016679 GO:0003677|GO:0005634|GO:0045893
Chy03g01261 368 PIRSF Txn_fac_GATA_plant 66 346 IPR016679 GO:0003677|GO:0005634|GO:0045893
Chy03g01261 368 MobiDBLite consensus disorder prediction 233 252 - -
Chy03g01261 368 MobiDBLite consensus disorder prediction 66 85 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01261 - - - csv:101205219 625.55
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy03g01261 Chy04g00155 CCT
Chy03g01261 Chy04g00155 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02263 Chy-Chr1:27058358 Chy03g01261 Chy-Chr3:15664740 3.54E-82 dispersed
Chy03g01261 Chy-Chr3:15664740 Chy04g00155 Chy-Chr4:1375627 5.30E-117 dispersed
Chy03g01261 Chy-Chr3:15664740 Chy04g00936 Chy-Chr4:13453297 2.05E-88 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g279 Blo01g01777 . . Bda03g00433 . . Bma04g00410 . Cmo05g00609 Cmo12g00198 . . Car09g00560 Car12g00226 . Cpe07g00206 Cpe06g00489 . . . . . . . . . . . . . . . . . . Lsi04g02328 Csa03g04547 Chy04g00155 Cme03g01757 . . . . . . . . Sed02g0905 . Cmo09g00615 Cma09g00633 Cma12g00243 . . Cpe11g00511 . Bhi09g02574 Tan01g3930 Cmetu04g2325 . Hepe01g2218 Mch11g0766 . . . . . . . . Lsi08g01074 Csa02g02256 Chy03g01261 Cme04g00180
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy03g01261 CCT,ECH 116 369 C2C2-Gata Transcription Factor Family AT5G25830 57.4 1.0e-71 267.3
Chy02g00597 CCT,ECH 86 257 C2C2-Gata Transcription Factor Family AT4G34680 50.3 3.0e-37 152.5
Chy07g01272 CCT,ECH 25 185 C2C2-Gata Transcription Factor Family AT5G66320 62.3 7.2e-49 191.4
Chy07g01272 CCT,ECH 25 185 C2C2-Gata Transcription Factor Family AT3G51080 62.4 1.0e-44 177.6
Chy02g00597 CCT,ECH 95 256 C2C2-Gata Transcription Factor Family AT4G36240 52.9 1.5e-40 163.3
Chy07g01272 CCT,ECH 32 178 C2C2-Gata Transcription Factor Family AT4G36240 53.3 1.5e-37 153.3
Chy03g01261 CCT,ECH 118 369 C2C2-Gata Transcription Factor Family AT4G32890 53.0 1.3e-60 230.3
Chy04g00025 . 1 514 C2C2-Gata Transcription Factor Family AT4G17570 52.5 5.3e-136 481.5
Chy06g02089 . 69 571 C2C2-Gata Transcription Factor Family AT4G17570 52.9 1.4e-128 456.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17721 PF00320 GATA 1.90E-15 CL0167 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01261 Chy_Chr03 FPKM 11.53304 11.625766 7.44618 7.836814 2.894186 3.158188 1.965186 13.314512 15.173034 13.389534