Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01261 ATGGAAGCTCCTGAATATTTCCAGATCAATGCCTACTCCTCTCAATTCTCCTCCGCCGACGACACCGATGCCACCACCACCGCCGCCGCTGCCGCTGCACCCGACCATTTCATCGTCGAGGAGCTTCTCGATTTCTCCAACAACGAAGATGACGCCGTCCTTACTGACTCTGGAGGTGGAGGAGGAGGAGGAGGATTGTTTTACAACAACAATAATACTTCTACTAATGATCATAGCAATAACAATAATTCAACGGAATCTTCCGCCGTTACCGTGATGGAGAGTTGCAATTCCTCATCCTCCTTTTTTGAAGATATCAGTGGCTCTAATTTAGGCGATGCCCATTTCTCCAGCGAACTCTGCGTTCCGTATGACGATTTAGCTGAGCTGGAATGGCTTTCAAACTTTGTAGAGGAATCATTTTCCAGCGAGGACATGCAAAAGTTAGAACTCATCTCCGGAGTCAAAGTCAAATCCGACGAACCCCCCACTCAATCCCCACAACCCACGGCCACCCGAACCGCAGCAGCAATTTTCAAACCGGAAATTGTTTCCGTTCCGGCTAAAGCCCGCAGCAAACGCTCACGTGCCCTCCCATCTAATTGGAACAACTCCGCCCTCCTTCCTCTTTCTTCTCCTACTGCCGAACCCGAAATTACAGCACCCATCGAACAACCACATCCCATTAAAAAAACCCTTCCCAAGGCGGCAGCTACGGCTAAGAAGAAGGACAGTCCAGAGTTAGGATTTTCATCCGGAGAGGGGCGTAAGTGCATGCACTGTGCCACCGACAAGACACCCCAGTGGCGGACTGGCCCAATGGGCCCAAAAACATTGTGTAATGCTTGTGGGGTTCGGTACAAATCCGGCCGCTTGGTACCGGAGTATCGCCCTGCCGCAAGCCCCACCTTTGTTTTAACGAAACACTCTAATTCTCACCGGAAAGTTTTGGAGCTTCGGCGACAAAAGGAGATTCTTAGAGCCCAACAACAGCAACAACAGCATTTGCTTTTGGATCATCGTCAAGATATGATCTTTGATGCATCAAACGGTGATGATTATCTCATTCATCAACATGTGGGGCCCGATTTCCGGCAGCTGATCTGA 1107 49.77 MEAPEYFQINAYSSQFSSADDTDATTTAAAAAAPDHFIVEELLDFSNNEDDAVLTDSGGGGGGGGLFYNNNNTSTNDHSNNNNSTESSAVTVMESCNSSSSFFEDISGSNLGDAHFSSELCVPYDDLAELEWLSNFVEESFSSEDMQKLELISGVKVKSDEPPTQSPQPTATRTAAAIFKPEIVSVPAKARSKRSRALPSNWNNSALLPLSSPTAEPEITAPIEQPHPIKKTLPKAAATAKKKDSPELGFSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEILRAQQQQQQHLLLDHRQDMIFDASNGDDYLIHQHVGPDFRQLI* 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15664740 15666454 + Chy3G062410.1 Chy03g01261 223422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01261 368 MobiDBLite consensus disorder prediction 64 85 - -
Chy03g01261 368 Pfam GATA zinc finger 258 291 IPR000679 GO:0006355|GO:0043565
Chy03g01261 368 PANTHER GATA TRANSCRIPTION FACTOR 1 368 - -
Chy03g01261 368 ProSiteProfiles GATA-type zinc finger domain profile. 252 288 IPR000679 GO:0006355|GO:0043565
Chy03g01261 368 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 254 316 - -
Chy03g01261 368 CDD ZnF_GATA 257 304 IPR000679 GO:0006355|GO:0043565
Chy03g01261 368 SMART GATA_3 252 302 IPR000679 GO:0006355|GO:0043565
Chy03g01261 368 ProSitePatterns GATA-type zinc finger domain. 258 283 IPR000679 GO:0006355|GO:0043565
Chy03g01261 368 Gene3D - 251 302 IPR013088 GO:0006355|GO:0008270
Chy03g01261 368 PANTHER GATA TRANSCRIPTION FACTOR 1 368 - -
Chy03g01261 368 PIRSF Txn_fac_GATA_plant 17 59 IPR016679 GO:0003677|GO:0005634|GO:0045893
Chy03g01261 368 PIRSF Txn_fac_GATA_plant 66 346 IPR016679 GO:0003677|GO:0005634|GO:0045893
Chy03g01261 368 MobiDBLite consensus disorder prediction 233 252 - -
Chy03g01261 368 MobiDBLite consensus disorder prediction 66 85 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy03g01261 Chy04g00155 CCT
Chy03g01261 Chy04g00155 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02263 Chy-Chr1:27058358 Chy03g01261 Chy-Chr3:15664740 3.54E-82 dispersed
Chy03g01261 Chy-Chr3:15664740 Chy04g00155 Chy-Chr4:1375627 5.30E-117 dispersed
Chy03g01261 Chy-Chr3:15664740 Chy04g00936 Chy-Chr4:13453297 2.05E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17721 PF00320 GATA 1.90E-15 CL0167 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01261 - - csv:101205219 625.55