Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy03g01266 | ATGTCCAGAATTATTCCACTGCCATTTCTCACAACCCTACTCCCTGTTTACCTCTTCTACTTCATCTACATACAATTCCATGCAAGTTCACTAACTGTCAATGTAGTCCAGGCCATCTTGCTTGATCTCAAAGAACAATGGGGGAATCCACCCTCTCTTGGGTTATGGAATGCCTCGTCCTTGTCCTGTGATTGGCCGGAGATCATCTGTAGAGATAGCACGGTCATTGGAATCTCTCTGAGGAACAAGAATATCACTGGGAAAGTCCCAACTGTCATATGTAAGCTGCAAAATCTCACTGTGCTTGATCTTTCATGGAACTATATCCCTGGTGAGTTCCCAGAAGTTTTATACAACTGTTCCAAGCTCAAATATCTTGATCTTTCAGGAAACTATTTTGTGGGTCCAATACCCCAAGATGTAGACCGGCTTCAAACTCTACAGTACATGGACCTTAGCGCCAACAACTTCTCAGGCGATTTTCCGGCTGCGCTAGGGCAGTTGTCAGATTTGAGAACTTTAAAAATTTACAGAACTCAATGCAATGGCACATTGCCAGCTGAAATTGGTAACTTGTCCAATCTTGAAATTTTGAGCATGGCGTATAACACTTTGCTTGTCCCATCGCCAATACCAGAAGATTTCAGGAAACTGAAGAAGTTGAAATATATGTGGATGACAAAGTCCAATTTGATAGGTGAAATCCCAGAAAGCTTATTGGAACTTTTAAGCCTTGAACACTTGGATTTATCCGGTAACAACTTGATAGGTTCTATTCCTGTTGGGTTCTTCTCTTTGCAGAATTTAACCAACTTATTTCTCTACCAAAACCAATTGTCCGGAGAAATACCCAAGTCGATTCGAGCATCAAATTTACTCAATGTTGACCTCTCTGCGAACAATTTAAGTGGCACGATCCCTGAAGATTTTGGGAAGTTAAAAAAGTTGCAGGTCTTGAACTTGTTTGCGAATCAGTTGTCTGGAGAGATTCCAGGAAGTCTAGGCCTCATACCTGAACTGAAAGGTTTTCGTGTATTCAACAACAGCCTAACTGGGGGCTTGCCCCAAGAATTGGGTCTGCACTCAAATCTGGAAGCATTGGAGGTTTCAATGAATAAACTAAGCGGTTCCTTACCTGAACATCTCTGTAAAAATGGCGTCTTACAGGGAGTAGTTGCTTTTTCCAACAATCTTAGTGGCAAATTGCCGAAAGGGCTTGGCAATTGTAGGACTTTACGAACAGTCCAGCTTTCTAACAACAATTTTTCTGGTGAAATTCCTCCAGGTCTTTGGACTACTTTCAATCTATCAAGCATAATGTTAGATGGAAATTCATTCTCAGGTGAGTTACCAGATAGCTTATCTTGGAATCTCTCGAGACTGGCAATAAATAACAACAAATTTTGGGGTCAAATTCCTCAAAATGTGTCAGCTTGGCGAAACTTGATTGTGTTTGAGGCAAGCGACAATCTGCTTTCTGGTAAGTTCCCTGATGGATTGACAAGTCTTCCTCGTCTTACCACACTTGTATTGAGTGGTAATCAACTCTCAGGCCAACTTCCAACAACAATTGGTTCGTGGGAATCATTGAATACTCTAAATCTCTCTAGAAATGAAATTTCAGGCCATATTCCTGCAGCATTTGGTTCTCTTCCTAACCTCCTATACCTGGATTTATCAGGTAATAACTTCACAGGTGAAATCCCACCTGAAATTGGCCACCTAAGACTGGCTTCCCTCAACTTGTCTTCCAATCAGCTTTCAGGGAAAATCCCAGATGAGTACGAGAATATAGCATATGAAAGGAGTTTCTTGAACAACGCCAAACTGTGTACCGCCATCAGTGTACTTGACCTTCCGAGCTGTTATTCTAGACAAATAGATTCAAAATATCAGTCCTTTAAATATCTTTCCCTCATTCTAGCTCTCACTGTTACCTTGCTCGTAATTGCTTTACTATGGATTATCATCCTATATAAAAGATATTGTAAAAAGGATGAAAGATACCACCCTGACACATGGAAGCTAACTTCATTCCAGAGATTGGAGTTCACAGAAACGAATATCTTGTCAAACTTGACAGAAACCAATCTGATCGGAAGTGGTGGATCCGGCAAAGTGTACTGCATAGACATCAACCATGCTGGTTATTATGTAGCTGTCAAAAGGATTTGGAGTAACAATAAGTTAGATAAAAAACTTGAGAAAGAATTTCAAGCAGAAGTTCAAATACTAGGCTCAATTCGGCATTCAAATATAGTGAAGCTGCTATGCTGCGTCTGGAATGAGAATTCAAAGCTTTTAGTCTATGAATACATGGAAAATCAGAGCCTAGATAGGTGGCTTCATAAAAAGAAGAAAAGGTTAACATCTGCGGCAGTGAATTTTCTTGAGCAATCTGTCTTAGACTGGCCGAGGAGGTGGCAGATTGCTATTGGAGCTGCACAGGGCCTCAGCTATATGCACCATGATTGCTCTCCACCAATCATTCATCGAGATGTGAAGTCGAGTAATATCTTATTAGACCGTGAGTTTCAGGCAAAGATAGCAGATTTTGGGTTGGCCAAGATGCTCGCCAGTCAGGGAGAGCCCCACACCATCTCTGCAATAGCAGGATCATTCGGCTACATAGCCCCAGAGTATGCCTACACAACGAAAGTAAATGAGAAGATTGATGTCTATAGCTTTGGGGTTGTACTCCTGGAGCTTACAACAGGAAGGGAACCTAACAGTGGAGATGAGCACACAAGCCTAGCAGAATGGGCATGGCAGCAATATAGTGAGGGAAAACCTATTATTGATTCCCTTGATGAGGAAATTAAAAACCCATGCAACTTCGAAGAGATGACTACTATGTTCAAACTTGGTCTAATTTGTACGAGCATGTTACCTGAAATACGACCTTCGATGAAAGAAGTTCTGCGTATTCTACGCCAATGCAGTCCTCCAGAAGCCTGTGATAGGAGAAAGCATGCCATTGAATTTGATGCTATTCCCTTCCTCGGCACTCCTCTATGA | 3018 | 41.55 | MSRIIPLPFLTTLLPVYLFYFIYIQFHASSLTVNVVQAILLDLKEQWGNPPSLGLWNASSLSCDWPEIICRDSTVIGISLRNKNITGKVPTVICKLQNLTVLDLSWNYIPGEFPEVLYNCSKLKYLDLSGNYFVGPIPQDVDRLQTLQYMDLSANNFSGDFPAALGQLSDLRTLKIYRTQCNGTLPAEIGNLSNLEILSMAYNTLLVPSPIPEDFRKLKKLKYMWMTKSNLIGEIPESLLELLSLEHLDLSGNNLIGSIPVGFFSLQNLTNLFLYQNQLSGEIPKSIRASNLLNVDLSANNLSGTIPEDFGKLKKLQVLNLFANQLSGEIPGSLGLIPELKGFRVFNNSLTGGLPQELGLHSNLEALEVSMNKLSGSLPEHLCKNGVLQGVVAFSNNLSGKLPKGLGNCRTLRTVQLSNNNFSGEIPPGLWTTFNLSSIMLDGNSFSGELPDSLSWNLSRLAINNNKFWGQIPQNVSAWRNLIVFEASDNLLSGKFPDGLTSLPRLTTLVLSGNQLSGQLPTTIGSWESLNTLNLSRNEISGHIPAAFGSLPNLLYLDLSGNNFTGEIPPEIGHLRLASLNLSSNQLSGKIPDEYENIAYERSFLNNAKLCTAISVLDLPSCYSRQIDSKYQSFKYLSLILALTVTLLVIALLWIIILYKRYCKKDERYHPDTWKLTSFQRLEFTETNILSNLTETNLIGSGGSGKVYCIDINHAGYYVAVKRIWSNNKLDKKLEKEFQAEVQILGSIRHSNIVKLLCCVWNENSKLLVYEYMENQSLDRWLHKKKKRLTSAAVNFLEQSVLDWPRRWQIAIGAAQGLSYMHHDCSPPIIHRDVKSSNILLDREFQAKIADFGLAKMLASQGEPHTISAIAGSFGYIAPEYAYTTKVNEKIDVYSFGVVLLELTTGREPNSGDEHTSLAEWAWQQYSEGKPIIDSLDEEIKNPCNFEEMTTMFKLGLICTSMLPEIRPSMKEVLRILRQCSPPEACDRRKHAIEFDAIPFLGTPL* | 1006 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 15720967 | 15724406 | + | Chy3G062460.1 | Chy03g01266 | 223427 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy03g01266 | 1005 | CDD | STKc_IRAK | 699 | 977 | - | - | |
Chy03g01266 | 1005 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 829 | 841 | IPR008271 | GO:0004672|GO:0006468 | |
Chy03g01266 | 1005 | SMART | LRR_typ_2 | 242 | 266 | IPR003591 | - | |
Chy03g01266 | 1005 | SMART | LRR_typ_2 | 192 | 217 | IPR003591 | - | |
Chy03g01266 | 1005 | SMART | LRR_typ_2 | 503 | 527 | IPR003591 | - | |
Chy03g01266 | 1005 | SMART | LRR_typ_2 | 551 | 575 | IPR003591 | - | |
Chy03g01266 | 1005 | SMART | LRR_typ_2 | 313 | 336 | IPR003591 | - | |
Chy03g01266 | 1005 | SMART | LRR_typ_2 | 96 | 120 | IPR003591 | - | |
Chy03g01266 | 1005 | Pfam | Leucine Rich Repeat | 244 | 263 | IPR001611 | GO:0005515 | |
Chy03g01266 | 1005 | Gene3D | Ribonuclease Inhibitor | 358 | 631 | IPR032675 | - | |
Chy03g01266 | 1005 | PANTHER | RECEPTOR KINASE-LIKE PROTEIN XA21 | 17 | 995 | - | - | |
Chy03g01266 | 1005 | SMART | serkin_6 | 693 | 1001 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Chy03g01266 | 1005 | Pfam | Leucine rich repeat | 529 | 587 | IPR001611 | GO:0005515 | |
Chy03g01266 | 1005 | ProSiteProfiles | Leucine-rich repeat profile. | 244 | 266 | IPR001611 | GO:0005515 | |
Chy03g01266 | 1005 | ProSiteProfiles | Protein kinase domain profile. | 693 | 1001 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Chy03g01266 | 1005 | Gene3D | Ribonuclease Inhibitor | 36 | 208 | IPR032675 | - | |
Chy03g01266 | 1005 | Gene3D | Transferase(Phosphotransferase) domain 1 | 773 | 996 | - | - | |
Chy03g01266 | 1005 | Pfam | Protein kinase domain | 695 | 974 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Chy03g01266 | 1005 | SUPERFAMILY | L domain-like | 44 | 383 | - | - | |
Chy03g01266 | 1005 | Gene3D | Phosphorylase Kinase; domain 1 | 662 | 772 | - | - | |
Chy03g01266 | 1005 | Gene3D | Ribonuclease Inhibitor | 209 | 356 | IPR032675 | - | |
Chy03g01266 | 1005 | SUPERFAMILY | Protein kinase-like (PK-like) | 684 | 977 | IPR011009 | - | |
Chy03g01266 | 1005 | ProSitePatterns | Protein kinases ATP-binding region signature. | 699 | 722 | IPR017441 | GO:0005524 | |
Chy03g01266 | 1005 | PANTHER | KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN | 17 | 995 | - | - | |
Chy03g01266 | 1005 | SUPERFAMILY | RNI-like | 290 | 624 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy02g01161 | Chy-Chr2:8312810 | Chy03g01266 | Chy-Chr3:15720967 | 1.42E-25 | dispersed | |
Chy02g01162 | Chy-Chr2:8320511 | Chy03g01266 | Chy-Chr3:15720967 | 0 | dispersed | |
Chy03g01266 | Chy-Chr3:15720967 | Chy06g01584 | Chy-Chr6:17955989 | 0 | dispersed | |
Chy03g01266 | Chy-Chr3:15720967 | Chy12g00907 | Chy-Chr12:14466675 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
71142 | PF00069 | Pkinase | 8.20E-47 | CL0016 | Chy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy03g01266 | K00924 | - | csv:101219431 | 1885.54 |