Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01278 ATGGCTTTTCACTCAGCTTTCTTTCTTCTTTTGTTCTTCACTACTTTCTCCATTCCTCCTCCTTCTCAAGCTCTTACTCCTGCTATTACCAACCAGTCTCAGTTCTTCAATCTTCTACAAAAGACTGCCTCAGGAGAGTTCCTGTCTGATTGGGATCTTTCAGGAGGCAAATCCTTCTGCAACTTCACAGGAATTCGGTGCAATGACCAAGGACATATCATTGAGATTGATATCTCTGGCCAGTCTCTCTCTGGGAGCTTTCCGGAAGATGTATGCTCTTACCTGCCAAAGCTGAGAGTTCTTCGTCTTGCTGGTACCGGTTTTCACGGACGTTTTCCTTCAGGAATTACCAACTGCTCTCTTATTGAAGAACTTAACATGAGCTCTTTATATCTCAATGGAACTATCCCGGATTTATCACAAATGAAACAGCTGCGTGTACTCGACCTCTCATACAATTCCTTTACTGGTGATTTTCCCATGTCGGTTTTCAACCTTGTTAATCTTGAGGAGCTGAATTTCAATGAAAATTACAAACTCAACTTATGGAAGTTGCCTGACAAGATATCCAGTCTGACAAAGCTAAAATCTATGGTCTTGACAACCTGTATGTTAGATGGCAAAATCCCACGATCGATAGGGAACATGACGTCTCTTGTTGATCTTGAACTAAGTGGGAACTTTCTCAAGGGAGAGATTCCAAAAGAAATCTCCTTGTTGAAGAACTTGCAACAACTTGAACTCTATTACAATGAACTCACGGGAAACATACCAGAGGAGCTTGGAAATTTAACAGAGCTGGTGGACATGGACATGTCAGTGAACCTTTTGACAGGAGAGCTTCCAGAATCCATTTGTAAACTCCCTAAGCTTAAAGTTCTACAGATTTACAACAATAGCCTCACAGGAGAGATCCCAAATGTGCTAGCCAACTCAACAACACTCACTATGCTATCACTTTATGACAATTTTCTTACTGGACAGATTCCTCAAAAGTTAGGGAAGTTCTCACCAATGGTTGTCCTTGACTTGTCAGAAAATCGCCTGTCTGGGCCATTGCCATTGGATATATGCAGAGGAGGGAAATTGCTATACTTTCTTGTCCTTCTAAATAGCCTTTCTGGAGAAATACCATCAAGCTATGCTGAATGTGTTTCACTTTTAAGGTTTAGGATTAGTTTCAATCAGTTGACGGGAACAATACCTGAAGGAGTTTTGGGTCTTCCCCATGTTTCAATTATTGATGTTGCTCAAAATAAGCTCACTGGTTCCATTTCAAATTCTATCTCGCAAGCAAGAAACTTGTCAGAGTTGTTCTTACAAGGAAACAGGATTTCTGGAGTTATACCACCGGAGATTTCAGGAGCAGCCAATCTGGTGAAGCTTGATCTTAGCAACAATCTTCTCTCCGGTCCAGTGCCATCACAGATTGGCAATCTGATGAAACTAAATCAGGTAATGTTACAAGGAAACCAACTGGATTCTTCAATCCCCACTTCATTCACATCTTTAAAGTCTCTCAACGTTCTTGATCTCTCGAACAATCGTTTAACCGGGAAAATTCCAGAAAGTTTGAGTGAATTGTTTCCAAGTTCTTTCAATTTTTCGAACAATCAACTTTCAGGTCCAATTCCTTTGTCTTTGATTAAACAAGGGTTAGCAGATAGCTTTTTCGGCAACCCAAATCTATGTGTTCCACCAGCGTATTTCATTTCACCAGATCAAAAATTCCCCATTTGTTCAAATTTTTCCTTTAGAAAACGTCTAAATTTCATCTGGGAATATGCATATTTATCAAAGGCAACAACCAAGTGCGATGTGTACAGCTTTGGAGTAGTGTTAATGGAGTTGATAACAGGGAAGAAGCCGATTGAAACCGAGTATGGAGAAAACAAGAACATTGTGTTCTGGGTTTCGAACAAAGTGGATACAAAAGAAGGGGTTCTTGAAATTCTTGACAATAAATTAAAAGGGTTGTTTAAGGATGACATAATTAAGGCTCTGAGAATCGCCATTCGCTGTACTTACAAGAATCCAGTGCTTCGACCCGCCATGCGAGAGGTGGTTCAGCTTCTGCAAGAGGTGGATCCTTGCAAATTTGACCGTCCCTTCGAAGATGTTGAAAAAGGGGAAGATACGTATATGATGTCACTAAAATAA 2160 40.42 MAFHSAFFLLLFFTTFSIPPPSQALTPAITNQSQFFNLLQKTASGEFLSDWDLSGGKSFCNFTGIRCNDQGHIIEIDISGQSLSGSFPEDVCSYLPKLRVLRLAGTGFHGRFPSGITNCSLIEELNMSSLYLNGTIPDLSQMKQLRVLDLSYNSFTGDFPMSVFNLVNLEELNFNENYKLNLWKLPDKISSLTKLKSMVLTTCMLDGKIPRSIGNMTSLVDLELSGNFLKGEIPKEISLLKNLQQLELYYNELTGNIPEELGNLTELVDMDMSVNLLTGELPESICKLPKLKVLQIYNNSLTGEIPNVLANSTTLTMLSLYDNFLTGQIPQKLGKFSPMVVLDLSENRLSGPLPLDICRGGKLLYFLVLLNSLSGEIPSSYAECVSLLRFRISFNQLTGTIPEGVLGLPHVSIIDVAQNKLTGSISNSISQARNLSELFLQGNRISGVIPPEISGAANLVKLDLSNNLLSGPVPSQIGNLMKLNQVMLQGNQLDSSIPTSFTSLKSLNVLDLSNNRLTGKIPESLSELFPSSFNFSNNQLSGPIPLSLIKQGLADSFFGNPNLCVPPAYFISPDQKFPICSNFSFRKRLNFIWEYAYLSKATTKCDVYSFGVVLMELITGKKPIETEYGENKNIVFWVSNKVDTKEGVLEILDNKLKGLFKDDIIKALRIAIRCTYKNPVLRPAMREVVQLLQEVDPCKFDRPFEDVEKGEDTYMMSLK* 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15810150 15813065 - Chy3G062580.1 Chy03g01278 223439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01278 719 Gene3D Transferase(Phosphotransferase) domain 1 573 700 - -
Chy03g01278 719 Gene3D Ribonuclease Inhibitor 280 572 IPR032675 -
Chy03g01278 719 Gene3D Ribonuclease Inhibitor 181 279 IPR032675 -
Chy03g01278 719 ProSiteProfiles Leucine-rich repeat profile. 506 528 IPR001611 GO:0005515
Chy03g01278 719 SUPERFAMILY L domain-like 257 576 - -
Chy03g01278 719 Gene3D Ribonuclease Inhibitor 33 180 IPR032675 -
Chy03g01278 719 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 594 702 - -
Chy03g01278 719 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 13 593 - -
Chy03g01278 719 PRINTS Leucine-rich repeat signature 459 472 - -
Chy03g01278 719 PRINTS Leucine-rich repeat signature 504 517 - -
Chy03g01278 719 SMART LRR_typ_2 504 528 IPR003591 -
Chy03g01278 719 SMART LRR_typ_2 166 192 IPR003591 -
Chy03g01278 719 SMART LRR_typ_2 288 311 IPR003591 -
Chy03g01278 719 SMART LRR_typ_2 433 456 IPR003591 -
Chy03g01278 719 SMART LRR_typ_2 240 264 IPR003591 -
Chy03g01278 719 SUPERFAMILY Protein kinase-like (PK-like) 594 695 IPR011009 -
Chy03g01278 719 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 594 702 - -
Chy03g01278 719 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 13 593 - -
Chy03g01278 719 Pfam Leucine Rich Repeat 507 528 IPR001611 GO:0005515
Chy03g01278 719 SUPERFAMILY RNI-like 72 352 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01278 - - - csv:101220145 1118.99
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy03g01278 Chy04g00175 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01278 Chy-Chr3:15810150 Chy04g00176 Chy-Chr4:1553221 1.27E-16 dispersed
Chy02g00797 Chy-Chr2:4989498 Chy03g01278 Chy-Chr3:15810150 2.81E-20 wgd
Chy03g01278 Chy-Chr3:15810150 Chy04g00175 Chy-Chr4:1542431 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g576 Blo01g01785 . . Bda03g00445 . Bpe04g00409 . Bma01g02569 Cmo05g00597 Cmo12g00184 Cma01g01455 Cma09g00611 . Car12g00210 . Cpe06g00472 Cpe07g00194 Bhi04g00891 . . . . . Lcy13g1799 . . . . . . . Cone4ag1266 Cone7ag0878 Cone17ag1151 Cone20ag0577 Lsi04g02309 Csa03g04527 Chy04g00175 Cme03g01772 . . . Bda13g01341 . Bpe14g00504 . Bma02g00096 . Cmo01g01507 Cmo09g00599 Cma12g00230 Cma05g00571 Car05g00517 Car09g00542 Cpe11g00500 Cpe02g00496 Bhi09g02546 . . . . . . . . . . . . . . Csa02g02237 Chy03g01278 Cme04g00205
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001786 1 2 3 2 2 1 3 1 1 2 2 2 4 2 1 4 1 4 3 1 2 2 2 2 1 2 2 2 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71143 PF00560 LRR_1 0.097 CL0022 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01278 Chy_Chr03 FPKM 0.0 0.0 0.0 0.0 0.085413 0.0 0.249308 0.0 0.11527 0.0