Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01280 ATGGTGATGCCGGAGTCGTCCGAAGGTCACCGTACGGCTTCTCGGCGAGCAAATCGACCGCCGATTCGACCGCTTGTAGGACCTAGGGTTCCACTGAGACGGTTACTAAGAGTCGCATCTATCGCATGTGGAATTCAATTCGGTTGGGCTTTGCAGCTTTCTCTTCTCACTCCTTATATTCAAGAGCTTGGTATTCCTCACGCTTGGTCTAGTCTTATATGGCTCTGTGGACCGATTTCTGGTCTCTTTGTTCAACCGCTCGTTGGTCATATGAGCGATCACTGCACCAGCCGATACGGTCGTCGGAGGCCGTTCATCGTCGCTGGAGCGCTTTCTATAGTACTCGCTGTTTTGGTTATTGGTCACTCTGCAGACCTCGGTTGGTGGATTGGTGACAGAGGTGATGTTAGGCCTCGTGCGATTGTATTCTTTGTGGTTGGCTTTTGGATTCTCGATGTAGCTAACAACGTCTCCCAAGGTCCTTGTAGAGCTCTGCTTGCTGATCTTACCGGAAAGGATCATCGAAGGAATCGAGTGGCAAATGCTTATTTTTCTCTATTTATTGCTGTTGGTAATATTTTTGGATATGCAACTGGATCTGTTAGTGGCTTGTACAAGATCTTCCCATTTACTCTCACCTCTGCATGTTCTGTTAATTGTGCAAATCTCAAGTCAGCTTTCTTGATTGATATCGTGTTCATTGCAATTACAACATATTTGAGTGTATCGGCAGCTCAAGAAATACCTCTAGTTTCAAACGACAGGTCCTCCCTGGTTTTAGAAGAAAGTATGGGGGAGTCAGGTCATGCTTCAGAAGCATTTTTCTGGGACTTGTTTCACACTTTTAGACACTTCTCTGGTTATATATGGGTAATTTTGCTTGTCACTTCCCTGACATGGGTAGCATGGTTTCCATTTATTCTCTTTGATACTGATTGGATGGGTAGAGAGATTTATGGTGGCAAGCCAAATGAAGGACAGACTTATAGTTCGGGAGTCAGAATGGGAGCATTTGGTCTGTTGTGTAACTCTGTTGTCCTCGGAATAACTTCACTACTTATGGAGAAGCTGTGCAGAAAGTGGGGTGCTGGTTTCATATGGGGAATCTCTAATATTTTTATGGGTATATGTTTTCTTACTATCCTGGTTGTTACGTATGTGGCAAACAATATGGGCTATACAGGTCACGATCTCCCACCAAATAGTATTGTATCAGCTGCATTGATTATCTTTGCCCTTCTTGGCGCCCCTTTGGCAATTACTTACAGTGTTCCATATGCCATGATTTCCTCACGCGCTGAATCTTTACAACTTGGTCAAGGTGAGATTCATGTTGTTTTCTTCAAATGGAAGAATAGAGGGCTGCTTATTGTGGAGTTGCTTCTTGCAGGTTTGTCTGCGGGTGTCTTGAACTTAGCAATAGTTTTCCCACAGGTTGTGGTGTCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAACTCTCCAGCTTTTGCTGTGGCAGCACTTGCAGCCTTTGCAAGTGGACTCATTGCCATCTTGGCTCTTCCTCGGTCTGGTGCTCAGAACCCCAGGAACCTCACATGA 1593 45.45 MVMPESSEGHRTASRRANRPPIRPLVGPRVPLRRLLRVASIACGIQFGWALQLSLLTPYIQELGIPHAWSSLIWLCGPISGLFVQPLVGHMSDHCTSRYGRRRPFIVAGALSIVLAVLVIGHSADLGWWIGDRGDVRPRAIVFFVVGFWILDVANNVSQGPCRALLADLTGKDHRRNRVANAYFSLFIAVGNIFGYATGSVSGLYKIFPFTLTSACSVNCANLKSAFLIDIVFIAITTYLSVSAAQEIPLVSNDRSSLVLEESMGESGHASEAFFWDLFHTFRHFSGYIWVILLVTSLTWVAWFPFILFDTDWMGREIYGGKPNEGQTYSSGVRMGAFGLLCNSVVLGITSLLMEKLCRKWGAGFIWGISNIFMGICFLTILVVTYVANNMGYTGHDLPPNSIVSAALIIFALLGAPLAITYSVPYAMISSRAESLQLGQGEIHVVFFKWKNRGLLIVELLLAGLSAGVLNLAIVFPQVVVSLGSGPWDQLFGGGNSPAFAVAALAAFASGLIAILALPRSGAQNPRNLT* 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15820581 15826004 + Chy3G062600.1 Chy03g01280 223441

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01280 530 PANTHER SUCROSE/H+ SYMPORTER, PLANT, MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED 463 528 - -
Chy03g01280 530 MobiDBLite consensus disorder prediction 1 22 - -
Chy03g01280 530 CDD MFS_SLC45_SUC 35 516 - -
Chy03g01280 530 PANTHER SUGAR TRANSPORTER 463 528 - -
Chy03g01280 530 Gene3D MFS general substrate transporter like domains 32 517 IPR036259 -
Chy03g01280 530 PANTHER SUCROSE/H+ SYMPORTER, PLANT, MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED 11 442 - -
Chy03g01280 530 PANTHER SUGAR TRANSPORTER 11 442 - -
Chy03g01280 530 Pfam MFS/sugar transport protein 48 236 - -
Chy03g01280 530 SUPERFAMILY MFS general substrate transporter 33 521 IPR036259 -
Chy03g01280 530 TIGRFAM GPH_sucrose: sucrose/H+ symporter 30 441 IPR005989 GO:0005887|GO:0008515|GO:0015770
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01280 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:101220384 955.666
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01280 Chy-Chr3:15820581 Chy05g00670 Chy-Chr5:8534420 3.26E-154 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g575 Blo01g01786 . . . Bpe02g00155 . . Bma01g02572 . Cmo12g00183 . . . Car12g00209 Sed08g1987 . Cpe07g00193 Bhi04g00897 Tan02g2516 Cmetu03g0103 . Hepe10g0399 . Lcy13g1450 Cla08g01190 Cam08g1654 Cec08g1231 Cco08g1350 Clacu08g1351 . Cre08g1137 . . . . . . . Cme03g01774 . . Bda11g00815 . . . . Bma02g00169 . . . Cma12g00228 . Car05g00514 . . . . . . . . . . . . . . . . . Lsi08g01052 Csa02g02236 Chy03g01280 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy05g00670 . 14 496 Sucrose Transporter Gene Family AT1G22710 62.4 6.0e-180 627.5
Chy05g00670 . 14 479 Sucrose Transporter Gene Family AT2G14670 64.3 2.9e-176 615.1
Chy05g00670 . 14 409 Sucrose Transporter Gene Family AT1G66570 62.3 7.0e-148 520.8
Chy09g00637 . 154 607 Sucrose Transporter Gene Family AT2G02860 70.9 3.5e-187 651.4
Chy05g00670 . 8 479 Sucrose Transporter Gene Family AT5G06170 61.2 3.4e-164 575.1
Chy05g00670 . 17 479 Sucrose Transporter Gene Family AT5G43610 64.1 6.1e-174 607.4
Chy03g01280 . 18 526 Sucrose Transporter Gene Family AT1G09960 66.8 3.7e-198 688.0
Chy05g00670 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.4 1.2e-132 470.3
Chy05g00670 . 14 496 Sucrose Transporter Gene Family AT1G71880 61.4 2.7e-172 602.1
Chy05g00670 . 17 496 Sucrose Transporter Gene Family AT1G71890 60.2 1.1e-168 590.1
Chy05g00670 . 14 496 Sucrose Transporter Gene Family AT1G71880 61.4 2.7e-172 602.1
Chy05g00670 . 14 496 Sucrose Transporter Gene Family AT1G22710 62.4 6.0e-180 627.5
Chy09g00637 . 154 607 Sucrose Transporter Gene Family AT2G02860 70.9 3.5e-187 651.4
Chy03g01280 . 18 526 Sucrose Transporter Gene Family AT1G09960 66.8 3.7e-198 688.0
Chy05g00670 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.4 1.2e-132 470.3
Chy05g00670 . 17 496 Sucrose Transporter Gene Family AT1G71890 60.2 1.1e-168 590.1
Chy05g00670 . 17 479 Sucrose Transporter Gene Family AT5G43610 64.1 6.1e-174 607.4
Chy05g00670 . 14 409 Sucrose Transporter Gene Family AT1G66570 62.3 7.0e-148 520.8
Chy05g00670 . 14 479 Sucrose Transporter Gene Family AT2G14670 64.3 2.9e-176 615.1
Chy05g00670 . 8 479 Sucrose Transporter Gene Family AT5G06170 61.2 3.4e-164 575.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010988 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01280 Chy_Chr03 FPKM 0.0 0.0 2.56229 0.92657 0.652531 0.0 1.172989 2.439625 0.0 2.368727