Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01282 ATGACCACCACCACTCCCACCAAGAACTTGGACAATAATAATAACAATCTTAATACTCATCATCATCATAATAACAATCTTCTCAAACCTTCTGATGATCAACTGGCTCAACTTCATAGATTACCAACTCTTTCTGAGGCAGTGGAAGAAATGAAGGAAATAGGGAAGATTTCAGGTCCAACAGCAATAACAGGGCTACTTTTGTACTCAAGAGCTATGATCTCCATGCTTTTTCTTGGTTACCTTGGTGAACTTGAACTTGCAGGGGGTTCTCTCTCTATTGGCTTTGCTAACATCACTGGTTACTCTGTTCTTTCTGGTTTAGCCATGGGCATGGAACCCATTTGTGGCCAAGCTTATGGAGCTAAACAATGGAAACTCCTTGGTATAACTCTTCAAAGAACTGTTCTTCTTCTTCTTACTTCCTCTGTTCCTATCTCCTTCATGTGGCTCAACATGAAACGAATCCTTTTATGGTGTGGTCAAGATGAGGAAATCTCTACCGTTGCCCAAACTTTCATTCTCTTCTCAATTCCTGATCTAATTTTCCTCTCCCTTCTTCATCCTCTTCGTATTTACTTAAGAACTCAAAGCATTACTCTCCCATTGACTTATTGCTCTGCTCTCTCTGTTTTGCTTCACGTTCCCCTGAATTTCCTCCTTGTTGTCCATTTCAAAATGGGGATTTCTGGTGTTGCCATTGCCATGGTTTGGTTTAATTTAAATGTCTTCTTGTTCCTTGTCTCCTTTGTTTACTTCTCTGGAGTGTATAAAGATTCTTGGGTTTCTCCAAGTGTGGATTGCCTCCATGGATGGACTCCTCTGCTTTCTCTTGCAATTCCCACTTGTGTCTCTGTTTGTCTTGAATGGTGGTGGTATGAATTCATGATAATGCTTTGTGGACTTCTTGTTAATCCCAAAGCTACAATTGCTTCAATGGGTATTTTGATTCAAACCACTTCTTTAGTTTATGTTTTCCCTTCCTCTCTCAGCTTTGGTGTTTCCACTAGAGTTGGAAATGAATTAGGGGCAAATCGACCCGCCAAAGCGCGCATTTCCATGATCGTTTCACTCATTTGTGCCGTTGCGCTTGGCGTAGCAGCCATGGTGTTCACCACTCTAATGAGGCACAAATGGGGTAGATTTTTCACCGATGACGCCGAGATTTTGGAACTCACTGCAGTGGCATTGCCGATCGTGGGGCTTTGTGAGTTAGGGAATTGCCCACAAACCACCGGGTGTGGTGTTTTGAGAGGAAGTGCTAGGCCGACGACAGGAGCAAATATAAATTTGGGATCATTCTATTTGGTGGGTTTTCCAGTGGCGATTTTGATGGGGTTTGTAGTGAAAATGGGTTTTGCAGGGCTGTGGATTGGGTTACTTGCGGCTCAAGGTACATGTGCTTTGATGATGATTTATGTACTTTGCACAACAGATTGGATGGTTCAAGTTGAAAGAGCAATGCAACTAACAATGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATTCCAATCCACCATTGTTGCCAATTTCACTTTCTTCTTCTTGTTCAGAAGATGAAGATGATGATGATAACGGCCATAAAGATGGAAGTGAGAGTATGAAAAAGATTGAAAATTTGGAGCAGATTTTGTGCAGTAATCATGAAACTCATCCTCTCATTCCCACTCCTACAAAACAGACTACTGTTCATTAA 1704 41.55 MTTTTPTKNLDNNNNNLNTHHHHNNNLLKPSDDQLAQLHRLPTLSEAVEEMKEIGKISGPTAITGLLLYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWKLLGITLQRTVLLLLTSSVPISFMWLNMKRILLWCGQDEEISTVAQTFILFSIPDLIFLSLLHPLRIYLRTQSITLPLTYCSALSVLLHVPLNFLLVVHFKMGISGVAIAMVWFNLNVFLFLVSFVYFSGVYKDSWVSPSVDCLHGWTPLLSLAIPTCVSVCLEWWWYEFMIMLCGLLVNPKATIASMGILIQTTSLVYVFPSSLSFGVSTRVGNELGANRPAKARISMIVSLICAVALGVAAMVFTTLMRHKWGRFFTDDAEILELTAVALPIVGLCELGNCPQTTGCGVLRGSARPTTGANINLGSFYLVGFPVAILMGFVVKMGFAGLWIGLLAAQGTCALMMIYVLCTTDWMVQVERAMQLTMASSSSSSSSSSSNSNPPLLPISLSSSCSEDEDDDDNGHKDGSESMKKIENLEQILCSNHETHPLIPTPTKQTTVH* 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15830402 15832210 + Chy3G062620.1 Chy03g01282 223443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01282 567 Pfam MatE 281 443 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Chy03g01282 567 Pfam MatE 60 220 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Chy03g01282 567 PANTHER MULTIDRUG RESISTANCE PROTEIN 30 504 - -
Chy03g01282 567 PANTHER PROTEIN DETOXIFICATION 30 504 - -
Chy03g01282 567 MobiDBLite consensus disorder prediction 495 536 - -
Chy03g01282 567 TIGRFAM matE: MATE efflux family protein 66 457 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Chy03g01282 567 MobiDBLite consensus disorder prediction 495 518 - -
Chy03g01282 567 CDD MATE_eukaryotic 50 486 IPR045069 GO:0042910|GO:1990961
Chy03g01282 567 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01282 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101207119 976.467
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01282 Chy-Chr3:15830402 Chy06g00914 Chy-Chr6:6710665 0 dispersed
Chy11g01525 Chy-Chr11:21852963 Chy03g01282 Chy-Chr3:15830402 7.70E-154 dispersed
Chy03g01282 Chy-Chr3:15830402 Chy02g01165 Chy-Chr2:8345487 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g574 . . . . . . . . Cmo05g00594 Cmo12g00181 . . . Car12g00207 Sed01g1237 . . Bhi04g00898 Tan02g2514 Cmetu03g1714 . Hepe10g0400 . Lcy13g1451 Cla08g01188 Cam08g1653 Cec08g1229 Cco08g1348 Clacu08g1349 . Cre08g1135 . . Cone17ag1153 Cone20ag0575 . . . Cme03g01775 Blo17g00082 Blo18g00092 . Bda13g01343 Bpe02g01171 Bpe14g00502 Bma01g01360 Bma02g00097 . . . Cma12g00226 Cma05g00568 Car05g00512 . Cpe11g00497 . . . . . . . . . . . . . . . Lsi08g01051 Csa02g02235 Chy03g01282 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006622 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01282 Chy_Chr03 FPKM 2.46085 3.614959 0.618773 0.0 0.0 0.0 0.0 1.079241 0.362072 0.708212