Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01285 ATGTCTACACCATTACTTGATGTTGGGGAGGTAGAGGAAAGTCGCAGCAATGTCACTCTGTTGGCTTCCTCAAACTCGATGGAGAGTGTCAGTCCGAACAATTTGGAATTTGAAGAGCGTAATTACATGGGATTATCTGATTCTTCTTCAGAGGACAGCTGTATCACTGCCACAAAATCTGATGGGAACAAACCCTCGCTGAATCTTAAGGCTACTGAACTGAGGCTTGGTCTCCCTGGATCTGAATCCCCCGAGAGAGATCCAGATAATTGCCTGCGTAGCTCTTCTCAACTTGATGAGAAACCACTATTTCCTTTGCACCCATCAAGTGATGGTCTCTACTCTTCCCCACAAAAGACTGTCGTCTCAGGCAACAAAAGGGGGTTTTCTGATGCTATGAACGAATTCTCAGAGGAAAAATATCACGCTAACATAGGTTTGAAAGCTGGTTCTTTGCTAGAGAACCTTGGAAGTCAAGTGGGGAAAGTGAAAGAGCCAACTACACAAAAGGCTGTACAAGAGAGGCCTCAAGAAAATAGTGAATCTAGACCATCTCACAATGAAACTGCAAATAACAACACCAGCACACCTGTTTCCAAGGCACAGGTTGTGGGTTGGCCGCCCATAAGATCTTTCAGGAAGAACACATTGGCTACAACTTCAAAGAACAATGATGAAGTTGACGGAAAGGCAATGGCTGGGGCACTCTTTATCAAAGTCAGCATGGATGGTGCTCCTTATCTTAGGAAGGTAGATCTGAGGAATTACTCTGCCTATCAGGAGCTGTCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTCACTATAGGTCAATATGGAGCTCATGGAGCTCTGGGCATGGAGAAAATGAGTGAGAGCAAGCTGAAAGATCTTCTTCATGGCTCAGAATATGTATTAACATATGAGGATAAAGATGGTGACTGGATGCTCGTTGGTGATGTCCCTTGGGAGATGTTCATCGACTCTTGTAAGAGGCTGAGGATTATGAAGAGCTCCGATGCAATTGGACTGGCTCCTAGGGCGGTGGAGAAGTGCCGAAACAGGAGCTAG 1068 45.41 MSTPLLDVGEVEESRSNVTLLASSNSMESVSPNNLEFEERNYMGLSDSSSEDSCITATKSDGNKPSLNLKATELRLGLPGSESPERDPDNCLRSSSQLDEKPLFPLHPSSDGLYSSPQKTVVSGNKRGFSDAMNEFSEEKYHANIGLKAGSLLENLGSQVGKVKEPTTQKAVQERPQENSESRPSHNETANNNTSTPVSKAQVVGWPPIRSFRKNTLATTSKNNDEVDGKAMAGALFIKVSMDGAPYLRKVDLRNYSAYQELSSALEKMFSCFTIGQYGAHGALGMEKMSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLRIMKSSDAIGLAPRAVEKCRNRS* 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15881864 15885209 - Chy3G062650.1 Chy03g01285 223446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01285 355 Gene3D - 230 349 - -
Chy03g01285 355 MobiDBLite consensus disorder prediction 43 67 - -
Chy03g01285 355 MobiDBLite consensus disorder prediction 160 202 - -
Chy03g01285 355 Pfam AUX/IAA family 72 346 IPR033389 -
Chy03g01285 355 PANTHER AUXIN-RESPONSIVE PROTEIN 23 140 - -
Chy03g01285 355 PANTHER AUXIN-RESPONSIVE PROTEIN 161 346 - -
Chy03g01285 355 MobiDBLite consensus disorder prediction 41 120 - -
Chy03g01285 355 MobiDBLite consensus disorder prediction 183 201 - -
Chy03g01285 355 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 23 140 IPR003311 GO:0005634|GO:0006355
Chy03g01285 355 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 161 346 IPR003311 GO:0005634|GO:0006355
Chy03g01285 355 MobiDBLite consensus disorder prediction 168 182 - -
Chy03g01285 355 SUPERFAMILY CAD & PB1 domains 231 336 - -
Chy03g01285 355 MobiDBLite consensus disorder prediction 80 94 - -
Chy03g01285 355 ProSiteProfiles PB1 domain profile. 235 337 IPR000270 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01285 K14484 IAA; auxin-responsive protein IAA - csv:101221088 704.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02086 Chy-Chr1:25609369 Chy03g01285 Chy-Chr3:15881864 5.51E-100 dispersed
Chy02g01796 Chy-Chr2:19697845 Chy03g01285 Chy-Chr3:15881864 1.51E-68 dispersed
Chy02g01839 Chy-Chr2:20528630 Chy03g01285 Chy-Chr3:15881864 2.75E-90 dispersed
Chy03g01285 Chy-Chr3:15881864 Chy05g00364 Chy-Chr5:3857014 5.95E-63 dispersed
Chy04g00952 Chy-Chr4:13769552 Chy03g01285 Chy-Chr3:15881864 2.20E-25 dispersed
Chy05g00286 Chy-Chr5:2811764 Chy03g01285 Chy-Chr3:15881864 4.83E-36 dispersed
Chy06g00425 Chy-Chr6:2892452 Chy03g01285 Chy-Chr3:15881864 6.71E-36 dispersed
Chy04g00163 Chy-Chr4:1447664 Chy03g01285 Chy-Chr3:15881864 8.06E-32 transposed
Chy02g00785 Chy-Chr2:4860412 Chy03g01285 Chy-Chr3:15881864 1.02E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g561 . . . . . . . . Cmo05g00590 . . . . . . . . Bhi04g00902 Tan02g2510 . . Hepe10g0403 . Lcy13g1453 Cla08g01185 Cam08g1650 Cec08g1226 Cco08g1345 Clacu08g1346 . Cre08g1132 Cone6ag1502 Cone9ag1428 . . . . . Cme03g01778 Blo17g00086 . . Bda13g01347 . . . . . . . . Cma05g00564 Car05g00510 . Cpe11g00495 . . . . . . . . . . . . . . . Lsi08g01048 Csa02g02232 Chy03g01285 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000884 4 6 5 5 3 2 3 2 2 2 2 2 3 2 2 3 2 5 3 2 2 2 2 2 2 2 2 5 7 1 87
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17722 PF02309 AUX_IAA 1.50E-92 CL0072 Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01285 Chy_Chr03 FPKM 80.896683 79.513161 70.872063 65.041504 224.857269 284.329956 223.968948 7.044001 7.417634 6.583994