Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01286 ATGGCTCTACGAAGAGATCCAAATTGGGAAGCCATTCCAAACGAAATTACCGATCTCTGCTCAAATGCTTGGCCATTCGATTACTGTTTCGATCAGAATACTCTTAGTTTTCCCCCAAATTCTTCCTCCCAACCTCTATCCACTCACAATCTCCACGAATTTTACAATCCTTTGCCAAATGAGTTCTCAGTACCACAAATTCCTGATTCCGCCTTTACGGCCATGGAAGTAGCAGCAGCAGCAGCCGTAGCCGCCGCGCCTCTGCCATTTCAGCCAGAGCATCCGAATGTAGAACGAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGCAATTAGGTTTTCTAGGGGATGAGATTCAGAATATGGAAACAGTTCAAGTTGAATCGATTTGTAAAATGGAGCCGAATCAATCTCCGGAAGAACTCCAGGTTTTCAACATCGGAACATGCTCCTCCTCCTCCTCCTTGGAACCGAAGAACAGAGCGAAGAAATTGCAAGGGCAACCGTCGAAGAATCTGATGGCGGAGAGAAGGAGAAGGAAGCGATTGAACGATCGACTGTCAATGCTCAGATCTATCGTTCCAAAGATCAGTAAGATGGATAGAACGGCGATTTTGGCAGATGCGATTGAGTATATGAAAGAATTGCTGGAGAAGATCGGGAATCTGCAAAATGAAGTGGAAGGATCAAATTCGAGGATGAATTCGTTGAAGAACACAAAACCGAGTGAATTCGTAGTGAGAAATACACCAAAATTTGAAGTGGAAAGCAGAAATGGAGAGACGAGAATCGAGATATGTTGTGGGGGAAAACCAGGATTGGTATTATCAACGGTGAATACGATTGAAGCATTGGGGCTTGAGATTCAACAATGTGTTATTAGCTGCTTCAACGACTTCGCATTGCAAGCCACGTGCTCTTCCCAGGAAATGAAGCAGAGAACAAGAGAAGTGGAGGCAGAAGAATTGAAGGAAGCATTGTTTAGGAATGCAGGTTATGGAGGAAGCTGCTTGTAG 1014 44.97 MALRRDPNWEAIPNEITDLCSNAWPFDYCFDQNTLSFPPNSSSQPLSTHNLHEFYNPLPNEFSVPQIPDSAFTAMEVAAAAAVAAAPLPFQPEHPNVEREEEEEEEEEEQLGFLGDEIQNMETVQVESICKMEPNQSPEELQVFNIGTCSSSSSLEPKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEKIGNLQNEVEGSNSRMNSLKNTKPSEFVVRNTPKFEVESRNGETRIEICCGGKPGLVLSTVNTIEALGLEIQQCVISCFNDFALQATCSSQEMKQRTREVEAEELKEALFRNAGYGGSCL* 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15895293 15897147 - Chy3G062660.1 Chy03g01286 223447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01286 337 CDD ACT_UUR-ACR-like 261 326 - -
Chy03g01286 337 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 26 337 - -
Chy03g01286 337 SMART finulus 172 221 IPR011598 GO:0046983
Chy03g01286 337 Gene3D - 169 242 IPR036638 GO:0046983
Chy03g01286 337 MobiDBLite consensus disorder prediction 149 166 - -
Chy03g01286 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 234 IPR036638 GO:0046983
Chy03g01286 337 MobiDBLite consensus disorder prediction 149 177 - -
Chy03g01286 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Chy03g01286 337 PANTHER DNA BINDING PROTEIN 26 337 - -
Chy03g01286 337 Coils Coil 205 239 - -
Chy03g01286 337 Coils Coil 97 117 - -
Chy03g01286 337 Pfam Helix-loop-helix DNA-binding domain 172 215 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy03g01286 Chy04g00184 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01286 Chy-Chr3:15895293 Chy09g00784 Chy-Chr9:10501633 5.89E-18 dispersed
Chy06g01460 Chy-Chr6:15811168 Chy03g01286 Chy-Chr3:15895293 3.25E-08 transposed
Chy12g01144 Chy-Chr12:16365054 Chy03g01286 Chy-Chr3:15895293 1.43E-37 transposed
Chy02g00781 Chy-Chr2:4839171 Chy03g01286 Chy-Chr3:15895293 1.78E-77 wgd
Chy03g01286 Chy-Chr3:15895293 Chy04g00184 Chy-Chr4:1633605 5.50E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17723 PF00010 HLH 6.30E-10 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01286 - - csv:101221329 614.764