Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01288 ATGGTGGTTAGAAAAGTCGGCAAGTACGAGGTCGGGAGGACGATTGGTGAAGGTACTTTCGCAAAGGTAAAGTTTGCTCAGAACACGGAGACTGGCGAGAGTGTTGCTATGAAAGTCCTCGATCGGAGCACCATAATCAAGCACAAGATGGTCGAGCAGATAAAGAAGGAGATTTCGATCATGAAGCTTGTGAGGCACCCTTATGTCGTTCGTCTTCATGAGGTTCTTGCAAGCCGTACTAAGATTTACATAATCTTGGAGTACATTACTGGTGGTGAATTGTTTGACAAAATAGTTCGTCATGGACGGCTTAGTGAAGCTGAATCTAGGAAGTACTTCCAACAGCTAATTGATGGTGTAGATTATTGCCACAGTAGGGGAGTATACCACAGAGATTTAAAACCTGAGAATCTGCTACTCGACTCCCTAGGTAATTTAAAGATCTCAGACTTTGGTCTGAGTGCGTTGCCTGAACAAGGAGTTAGCCTACTCCGCACAACATGTGGGACTCCAAACTATGTAGCACCAGAGGTGCTCAATCACAAGGGTTACGATGGTGCTATGGCAGACGTTTGGTCCTGTGGGGTAATCCTTTATGTGTTAATGGCAGGATATCTTCCATTTGATGAGCTTGATCTCACCACGTTATATAGTAAGATTGAAAGAGCCGACTTTTCATGTCCATCTTGGTTCCCGGTGGGGGCAAAAGCCTTAATCTGCAGAATATTTGACCCCAATCCTTCTACTCGTATTACAATTGAACAGATCAGAGAGGATGAGTGGTTCAAGAAAAATTATGTTTCAGTCAAATTGGTCGAAGACGAAGATGTAAATCTGGATGATGTGAATGCTGTCTTTGATGATCCTGAGGAACCAAGGACCGAAGAACAAAGCGGTAACGAGAACATGTGCCCTCTCGCCCTTAATGCATTTGATCTAATAATTCTATCACAAGGCTTAAACCTGGGAACGATGTTTGACCGTGGCCAGGATTCTATGAAGTACCCTACACGCTTCGTCTGCCAAAAGCCTGCAAAGGTCTTATTATCAACAATGGAAGTCGTAGCTCAATCAATGGGTTTCAAGACACACATACGCAATTACAAGATGAGAGTAGAAGGTCCTTCGGCAAGTAAAACTTCGTATTTCTCAGTCATTATGGAAATCTTTGAAGTTGCTCCCACGTTTTTTATGGTCGACATTCAGAAAGCAGCAGGGGAAACCAGCGAGTACCTTAAGTTCTACAAGAGCTTTTATGGCAATCTTGAAGACATCGTCTGGAAACCATCATTTGACACCAGCAAATCGAGGATCGCCAAGAACAAAAGTAAAAAACGTTGA 1341 43.33 MVVRKVGKYEVGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMVEQIKKEISIMKLVRHPYVVRLHEVLASRTKIYIILEYITGGELFDKIVRHGRLSEAESRKYFQQLIDGVDYCHSRGVYHRDLKPENLLLDSLGNLKISDFGLSALPEQGVSLLRTTCGTPNYVAPEVLNHKGYDGAMADVWSCGVILYVLMAGYLPFDELDLTTLYSKIERADFSCPSWFPVGAKALICRIFDPNPSTRITIEQIREDEWFKKNYVSVKLVEDEDVNLDDVNAVFDDPEEPRTEEQSGNENMCPLALNAFDLIILSQGLNLGTMFDRGQDSMKYPTRFVCQKPAKVLLSTMEVVAQSMGFKTHIRNYKMRVEGPSASKTSYFSVIMEIFEVAPTFFMVDIQKAAGETSEYLKFYKSFYGNLEDIVWKPSFDTSKSRIAKNKSKKR* 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15914927 15920385 + Chy3G062680.1 Chy03g01288 223449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01288 446 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g01288 446 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
Chy03g01288 446 SMART serkin_6 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g01288 446 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g01288 446 PANTHER - 2 443 - -
Chy03g01288 446 Pfam NAF domain 305 363 IPR004041 GO:0007165
Chy03g01288 446 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Chy03g01288 446 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 443 - -
Chy03g01288 446 Gene3D Transferase(Phosphotransferase) domain 1 3 305 - -
Chy03g01288 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Chy03g01288 446 Gene3D Kinase associated domain 1, KA1 306 428 - -
Chy03g01288 446 SUPERFAMILY Protein kinase-like (PK-like) 6 263 IPR011009 -
Chy03g01288 446 CDD CIPK_C 309 418 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02012 Chy-Chr2:24062118 Chy03g01288 Chy-Chr3:15914927 0 dispersed
Chy03g01288 Chy-Chr3:15914927 Chy05g00039 Chy-Chr5:263124 0 dispersed
Chy11g00432 Chy-Chr11:4178486 Chy03g01288 Chy-Chr3:15914927 2.40E-67 dispersed
Chy03g01288 Chy-Chr3:15914927 Chy12g00355 Chy-Chr12:3797110 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71144 PF00069 Pkinase 1.50E-71 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01288 - - csv:101222107 883.248