Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01289 ATGGCTTCCGTCCCTTCTGTTTCCCTCACTGCTGCTCTCAAACTTGAACCCCATCCAAGAAAACGTCATTCAACCACCAGCCTTCCCCTCAACGATAAGGATAAGAGTGTGGGGTTTCAGAAAAATCATTCTCTAATCCAATTGAATGTTGTTGATGCGGAGGAGCCGAAATTGGGTACGAGAATCGAATCTTCTTACTATTTTCCATTGTTGCAAGAATGTATAGATAGGACCTTAGCTACAGAAGCAAGAATGATTCATGGGCATATTGTAAAAACTGGATTTCACGAAGATTTATTTGTTATGACTTTTCTTGTTAATGTTTATTCCAAATGTGGAGTCATGGAAAGTGCTCACAAGGTGTTTGATAATTTGCCTATAAGAAATGTCAATGCGTGGACAACTCTACTGACTGGTTATGTTCAGAATTCACACCCTCTGCTTGCTCTTCAATTGTTCATAAAAATGTTGGAAGCTGGAGCGTATCCTAGTAATTACACGCTCGGAATCGTGTTGAATGCTTGTTCTTCCCTGCAATCTATCGAATTTGGGAAGCAGGTTCATGCATATATTATCAAATACCATATAGATTTTGATACTAGTATTGGCAACTCTCTTTCTAGTTTCTACTCTAAGTTTCGAAGATTGGAATTTGCAATAAAAGCCTTCCAGATAATCAAGGAAAAGGATGTCATTTCATGGACTTCAGTTATATCTTCTTGTTGTGATAATGGTCAAGCAGCTCGGAGTTTAAGTTTTTTCATGGACATGCTCTCGGATGGCATGAAACCAAACGAGTACACTTTAACAAGTGTTTTGAGCGCTTGTTGTGTAATGCTGACATTGGATTTAGGAGCACAGATTCATTCACTAAGCATTAAGCTTGGTTATGGTTCAAGCATACTGATAAAAAATTCTATCATGTATTTGTACTTGAAATGTGGATGGCTTATTGAGGCTCAGAAATTGTTTGAAGGTATGGAGACTCTCAATTTGGTTACATGGAATGCAGTGATTGCAGGCCATGCTAAAATGATGGATCTTGCTGAAGATGATGTTGCAGCTCACAAGAGTGGTTCTACAGCACTTGCTATGTTCCAGAAATTATATCGCTCGGGAATGAAACCCGATCTGTTCACATTTTCGAGCGTTTTGAGTGTTTGTAGTAATCTAGTAGCCTTAGAACAAGGGGAACAGATTCATGGTCAGATAATCAAAAGTGGTGTTTTGGCAGATGTGGTGGTGGGAACTGCACTGGTGAGTATGTATAACAAATGTGGAAGTATTGACAAGGCCAGTAAAGCTTTCTTGGAGATGCCTTCGAGAACAATGATATCATGGACTTCGATGATTACGGGATTTGCACGACATGGTTTGTCTCAACAAGCACTTCAACTCTTTGAAGACATGAGATTGGTAGGAATTAAACCAAACCAAGTCACTTTTGTAGGAGTTCTATCAGCTTGTAGCCATGCTGGTTTGGCTGATGAAGCACTCTATTATTTTGAATTAATGCAAAAGCAATACAACATTAAGCCTGTAATGGACCATTTTGCATGCCTGATTGACATGTATTTGAGGTTGGGTCGGGTTGAAGAAGCTTTTGATGTAGTCCATAAGATGAATTTTGAGCCTAACGAAACTATCTGGTCCATGTTAATAGCTGGATGTCGAAGTCACGGGAAATCCGATCTAGGGTTTTACGCTGCTGAGCAGTTACTCGAACTCAAACCAAAAGACGTCGAAACATATGTCTCTCTGCTAAACATGCACATCTCTGCTGGGAGATGGAAGGATGTTTCCAAAGTGAGGAAATTAATGAAAGAAGAGAAGGTTGGGAAGTTGAAAGATTGGAGCTGGATTAGCATCAAAGAAAAAGTTTATTCGTTTAAACCTAATGACAAGTCTCATTGTCAAAGTCCAGAGATGTACAAGTTGTTGGAGACCGTACTCAATGAGGTAAAAGCTCTCGGTTACGAGCCTATTGAAGATGTGGAAGTAATGGAAAAAGAGGAAAATGAGGAAAGAGTATTATCCTCTACAATTCATCATAGCGAAAAGTTAGCCATTGCTTTCGGTTTGTTAAACCTGCCAACTGCGACCCCAATTCGGGTTGTAAAGAGCATCACCATGTGTAGGGATTGCCACAATTTTATCAGATTCATTTCTTTATTGAAAGGAAGGGAAATTGTCATCAGAGATAGTAAGCAGCTTCACAAGTTTTTGAACGGATACTGTTCTTGTGGAGGATATGGAGATTATCCTTAA 2268 39.42 MASVPSVSLTAALKLEPHPRKRHSTTSLPLNDKDKSVGFQKNHSLIQLNVVDAEEPKLGTRIESSYYFPLLQECIDRTLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPIRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYIIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFQIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAVIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLELKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKSHCQSPEMYKLLETVLNEVKALGYEPIEDVEVMEKEENEERVLSSTIHHSEKLAIAFGLLNLPTATPIRVVKSITMCRDCHNFIRFISLLKGREIVIRDSKQLHKFLNGYCSCGGYGDYP* 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15920830 15923223 - Chy3G062690.1 Chy03g01289 223450

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01289 755 Pfam PPR repeat family 445 490 IPR002885 -
Chy03g01289 755 Pfam PPR repeat family 128 176 IPR002885 -
Chy03g01289 755 Pfam PPR repeat family 229 277 IPR002885 -
Chy03g01289 755 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 62 687 - -
Chy03g01289 755 Pfam E motif 563 621 IPR046848 -
Chy03g01289 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Chy03g01289 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Chy03g01289 755 TIGRFAM PPR: pentatricopeptide repeat domain 518 541 IPR002885 -
Chy03g01289 755 TIGRFAM PPR: pentatricopeptide repeat domain 480 513 IPR002885 -
Chy03g01289 755 TIGRFAM PPR: pentatricopeptide repeat domain 232 266 IPR002885 -
Chy03g01289 755 TIGRFAM PPR: pentatricopeptide repeat domain 445 478 IPR002885 -
Chy03g01289 755 TIGRFAM PPR: pentatricopeptide repeat domain 132 164 IPR002885 -
Chy03g01289 755 Gene3D Tetratricopeptide repeat domain 53 180 IPR011990 GO:0005515
Chy03g01289 755 Gene3D Tetratricopeptide repeat domain 288 395 IPR011990 GO:0005515
Chy03g01289 755 Gene3D Tetratricopeptide repeat domain 396 495 IPR011990 GO:0005515
Chy03g01289 755 Gene3D Tetratricopeptide repeat domain 181 284 IPR011990 GO:0005515
Chy03g01289 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 580 614 IPR002885 -
Chy03g01289 755 Pfam DYW family of nucleic acid deaminases 658 751 IPR032867 GO:0008270
Chy03g01289 755 Gene3D Tetratricopeptide repeat domain 496 686 IPR011990 GO:0005515
Chy03g01289 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 129 163 IPR002885 -
Chy03g01289 755 PANTHER OS01G0913400 PROTEIN-RELATED 62 687 - -
Chy03g01289 755 Pfam PPR repeat 520 541 IPR002885 -
Chy03g01289 755 Pfam PPR repeat 417 442 IPR002885 -
Chy03g01289 755 Pfam PPR repeat 305 330 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01289 - - - csv:101207363 1467.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01289 Chy-Chr3:15920830 Chy06g00924 Chy-Chr6:6789137 4.10E-51 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g554 . . Bda01g00921 . . . . . . . . . . . . . . Bhi04g00908 . . . . . Lcy13g1457 Cla08g01181 . . . . . . . . Cone17ag1161 . . . . . . . . . Bpe02g01166 . Bma01g01366 . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01042 Csa02g02228 Chy03g01289 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010527 1 1 1 1 1 1 2 1 1 1 1 1 2 0 0 2 1 1 2 1 1 0 1 1 0 1 1 0 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01289 Chy_Chr03 FPKM 13.462632 13.949928 16.720068 17.001427 29.441803 30.123199 28.452314 17.839714 15.816992 15.988373