Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01292 ATGGCCGCCGCCGTGCCGGAAAATCTGTCTCGCGAGCAATACGTGTACCTAGCGAAGCTTGCTGAGCAGGCGGAAAGATATGAGGAGATGGTTCAGTTCATGCAGAAACTTGTTCTTGGTTCAACACCTGGCTCAGAGCTATCTGTTGAGGAGCGAAATCTTCTCTCTGTGGCTTACAAGAACGTGATTGGCTCACTTCGAGCTGCTTGGCGGATTGTTTCTTCCATCGAGCAAAAGGAGGAAAGTCGTAAGAATGAAGAGCATGTTGTGCTTGTTAAAGATTATAGATCAAAGGTTGAGTCTGAGCTTTCCGATGTCTGCGCGAGTATTTTGCAGCTTTTGGACTCGAATCTTATTCCATCTGCCTCTGCTAGTGAGTCTAAGGTCTTCTACTTGAAGATGAAAGGGGATTACCATAGGTATTTGGCGGAGTTTAAGGTTGGAGATGAGAGGAAAGCTGCTGCTGAGGATACTATGCTGGCTTATAGGGCTGCTCAGGATGTCGCAGTTGCGGATCTTGCTCCCACTCATCCGATAAGGCTGGGGCTGGCACTCAATTTCTCTGTGTTTTACTTCGAGATTCTGAATCAGTCCGATAAAGCATGTAGCATGGCCAAGGAGAAGTTGATTGGATCTGTGACTGAATGTGAATCATTGATCCATCTCCCTTTGCAAGAATTCAATCATAGATTGAAACTGCTCGCTGACGTTGTTACAAGAAGTATGCTTTCCCCATCTTTCTTTCGTGTGTTACTCATCAGTCCATACTCCTCTGATCAGGCATTTGAGGAAGCCATTGCTGAGCTGGACACTCTGGGTGAAGAATCATACAAGGACAGTACCCTCATCATGCAACTATTGAGGGACAACCTCACTCTCTGGACTTCAGATGCGCAGGACCAGTTAGATGAGTCATAG 918 46.51 MAAAVPENLSREQYVYLAKLAEQAERYEEMVQFMQKLVLGSTPGSELSVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEESRKNEEHVVLVKDYRSKVESELSDVCASILQLLDSNLIPSASASESKVFYLKMKGDYHRYLAEFKVGDERKAAAEDTMLAYRAAQDVAVADLAPTHPIRLGLALNFSVFYFEILNQSDKACSMAKEKLIGSVTECESLIHLPLQEFNHRLKLLADVVTRSMLSPSFFRVLLISPYSSDQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDAQDQLDES* 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15935736 15938925 - Chy3G062720.1 Chy03g01292 223453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01292 305 PANTHER 14-3-3 PROTEIN 259 301 IPR000308 -
Chy03g01292 305 PANTHER 14-3-3 PROTEIN 8 238 IPR000308 -
Chy03g01292 305 ProSitePatterns 14-3-3 proteins signature 2. 277 296 IPR023409 -
Chy03g01292 305 PRINTS 14-3-3 protein zeta signature 161 187 IPR000308 -
Chy03g01292 305 PRINTS 14-3-3 protein zeta signature 95 119 IPR000308 -
Chy03g01292 305 PRINTS 14-3-3 protein zeta signature 126 148 IPR000308 -
Chy03g01292 305 PRINTS 14-3-3 protein zeta signature 46 75 IPR000308 -
Chy03g01292 305 PRINTS 14-3-3 protein zeta signature 188 214 IPR000308 -
Chy03g01292 305 Coils Coil 17 37 - -
Chy03g01292 305 Pfam 14-3-3 protein 259 295 IPR023410 -
Chy03g01292 305 Pfam 14-3-3 protein 17 236 IPR023410 -
Chy03g01292 305 PANTHER BNAC02G00320D PROTEIN 259 301 - -
Chy03g01292 305 PANTHER BNAC02G00320D PROTEIN 8 238 - -
Chy03g01292 305 ProSitePatterns 14-3-3 proteins signature 1. 52 62 IPR023409 -
Chy03g01292 305 SMART 1433_4 11 304 IPR023410 -
Chy03g01292 305 Gene3D - 1 305 IPR036815 -
Chy03g01292 305 SUPERFAMILY 14-3-3 protein 10 209 IPR036815 -
Chy03g01292 305 SUPERFAMILY 14-3-3 protein 259 300 IPR036815 -
Chy03g01292 305 PIRSF 14-3-3 257 305 IPR000308 -
Chy03g01292 305 PIRSF 14-3-3 6 242 IPR000308 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01292 K06630 YWHAE; 14-3-3 protein epsilon - csv:101222827 459.914
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01292 Chy-Chr3:15935736 Chy04g00220 Chy-Chr4:1986377 1.11E-134 dispersed
Chy11g00784 Chy-Chr11:11071151 Chy03g01292 Chy-Chr3:15935736 2.12E-06 dispersed
Chy03g01292 Chy-Chr3:15935736 Chy04g00245 Chy-Chr4:2195752 4.76E-20 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g00245 CCT 5 242 14-3-3 family AT4G09000 90.8 3.1e-118 421.8
Chy03g01354 CCT 4 261 14-3-3 family AT4G09000 84.1 1.9e-115 412.5
Chy07g00921 . 4 241 14-3-3 family AT4G09000 87.0 2.3e-113 405.6
Chy04g00220 . 11 256 14-3-3 family AT4G09000 72.8 3.9e-97 351.7
Chy01g00337 . 7 238 14-3-3 family AT4G09000 73.1 2.0e-93 339.3
Chy03g01292 . 10 299 14-3-3 family AT4G09000 61.4 3.2e-91 332.0
Chy10g01053 . 4 245 14-3-3 family AT4G09000 70.9 1.0e-89 327.0
Chy03g00712 . 105 318 14-3-3 family AT4G09000 71.8 1.2e-82 303.5
Chy04g00255 CCT,ECH 5 255 14-3-3 family AT4G09000 66.0 2.1e-82 302.8
Chy03g01367 CCT,ECH 10 128 14-3-3 family AT4G09000 76.5 3.7e-47 185.7
Chy04g00245 CCT 5 258 14-3-3 family AT1G78300 90.2 2.0e-123 438.7
Chy03g01354 CCT 6 281 14-3-3 family AT1G78300 84.1 3.2e-121 431.4
Chy07g00921 . 6 253 14-3-3 family AT1G78300 87.1 3.6e-117 417.9
Chy04g00220 . 11 257 14-3-3 family AT1G78300 73.3 6.5e-98 354.0
Chy01g00337 . 7 247 14-3-3 family AT1G78300 71.2 5.7e-94 340.9
Chy03g01292 . 11 300 14-3-3 family AT1G78300 62.1 1.4e-92 336.3
Chy10g01053 . 8 269 14-3-3 family AT1G78300 68.2 1.3e-90 329.7
Chy03g00712 . 105 336 14-3-3 family AT1G78300 69.2 1.1e-84 310.1
Chy04g00255 CCT,ECH 1 262 14-3-3 family AT1G78300 63.3 2.6e-83 305.4
Chy03g01367 CCT,ECH 10 142 14-3-3 family AT1G78300 70.7 4.2e-49 191.8
Chy07g00921 . 6 259 14-3-3 family AT5G38480 90.2 1.5e-123 439.1
Chy04g00245 CCT 6 252 14-3-3 family AT5G38480 85.0 1.1e-113 406.4
Chy03g01354 CCT 6 271 14-3-3 family AT5G38480 79.7 2.9e-111 398.3
Chy04g00220 . 10 261 14-3-3 family AT5G38480 71.0 2.9e-95 345.1
Chy01g00337 . 7 247 14-3-3 family AT5G38480 72.0 1.0e-92 336.7
Chy10g01053 . 8 261 14-3-3 family AT5G38480 71.5 6.8e-92 334.0
Chy03g01292 . 10 304 14-3-3 family AT5G38480 61.4 1.7e-90 329.3
Chy03g00712 . 105 334 14-3-3 family AT5G38480 70.7 1.8e-84 309.3
Chy04g00255 CCT,ECH 5 267 14-3-3 family AT5G38480 64.5 2.2e-82 302.4
Chy03g01367 CCT,ECH 8 139 14-3-3 family AT5G38480 72.0 2.7e-48 189.1
Chy03g01366 . 152 272 14-3-3 family AT5G38480 67.5 3.7e-37 152.1
Chy04g00245 CCT 4 242 14-3-3 family AT1G35160 89.1 3.2e-117 418.3
Chy03g01354 CCT 3 261 14-3-3 family AT1G35160 83.4 3.9e-115 411.4
Chy07g00921 . 3 240 14-3-3 family AT1G35160 86.6 2.4e-112 402.1
Chy04g00220 . 1 256 14-3-3 family AT1G35160 72.3 5.1e-99 357.8
Chy01g00337 . 2 237 14-3-3 family AT1G35160 71.0 3.5e-92 335.1
Chy03g01292 . 1 299 14-3-3 family AT1G35160 60.9 2.3e-91 332.4
Chy10g01053 . 8 245 14-3-3 family AT1G35160 71.7 1.3e-89 326.6
Chy03g00712 . 105 318 14-3-3 family AT1G35160 71.8 5.1e-83 304.7
Chy04g00255 CCT,ECH 5 255 14-3-3 family AT1G35160 66.0 2.5e-82 302.4
Chy03g01367 CCT,ECH 10 128 14-3-3 family AT1G35160 74.8 1.7e-46 183.3
Chy03g01366 . 146 272 14-3-3 family AT1G35160 60.5 1.2e-36 150.6
Chy07g00921 . 4 254 14-3-3 family AT5G16050 86.5 7.6e-118 420.2
Chy04g00245 CCT 4 251 14-3-3 family AT5G16050 79.1 2.5e-105 378.6
Chy03g01354 CCT 3 272 14-3-3 family AT5G16050 73.7 3.3e-105 378.3
Chy04g00220 . 10 258 14-3-3 family AT5G16050 67.9 6.7e-90 327.4
Chy03g01292 . 10 301 14-3-3 family AT5G16050 58.6 1.7e-85 312.8
Chy01g00337 . 1 246 14-3-3 family AT5G16050 65.1 2.5e-84 308.9
Chy10g01053 . 3 252 14-3-3 family AT5G16050 63.9 6.1e-83 304.3
Chy03g00712 . 119 325 14-3-3 family AT5G16050 72.5 8.8e-82 300.4
Chy04g00255 CCT,ECH 5 261 14-3-3 family AT5G16050 61.5 3.8e-77 285.0
Chy03g01367 CCT,ECH 7 139 14-3-3 family AT5G16050 73.7 4.4e-49 191.8
Chy04g00220 . 9 256 14-3-3 family AT5G10450 81.9 8.6e-109 390.2
Chy03g01292 . 9 299 14-3-3 family AT5G10450 71.8 4.7e-107 384.4
Chy04g00245 CCT 1 242 14-3-3 family AT5G10450 79.0 6.3e-104 374.0
Chy07g00921 . 4 259 14-3-3 family AT5G10450 73.9 1.1e-103 373.2
Chy03g01354 CCT 3 270 14-3-3 family AT5G10450 71.4 5.0e-101 364.4
Chy01g00337 . 1 238 14-3-3 family AT5G10450 68.0 1.7e-88 322.8
Chy10g01053 . 3 245 14-3-3 family AT5G10450 65.0 4.7e-83 304.7
Chy04g00255 CCT,ECH 5 255 14-3-3 family AT5G10450 61.4 4.6e-78 288.1
Chy03g00712 . 119 318 14-3-3 family AT5G10450 68.0 6.2e-75 277.7
Chy03g01367 CCT,ECH 10 128 14-3-3 family AT5G10450 72.3 1.5e-44 176.8
Chy07g00921 . 6 260 14-3-3 family AT3G02520 93.0 1.2e-128 456.1
Chy04g00245 CCT 5 258 14-3-3 family AT3G02520 84.4 2.4e-116 415.2
Chy03g01354 CCT 6 271 14-3-3 family AT3G02520 80.9 2.3e-114 408.7
Chy04g00220 . 10 258 14-3-3 family AT3G02520 72.3 2.5e-97 352.1
Chy03g01292 . 10 301 14-3-3 family AT3G02520 62.3 6.4e-93 337.4
Chy10g01053 . 8 262 14-3-3 family AT3G02520 67.7 2.1e-91 332.4
Chy01g00337 . 1 238 14-3-3 family AT3G02520 71.3 6.0e-91 330.9
Chy03g00712 . 105 336 14-3-3 family AT3G02520 68.3 2.9e-85 312.0
Chy04g00255 CCT,ECH 1 260 14-3-3 family AT3G02520 64.9 1.6e-83 306.2
Chy03g01367 CCT,ECH 7 141 14-3-3 family AT3G02520 72.1 5.7e-49 191.4
Chy03g01366 . 148 272 14-3-3 family AT3G02520 63.8 2.2e-37 152.9
Chy04g00220 . 9 256 14-3-3 family AT5G65430 81.5 9.6e-110 393.3
Chy03g01292 . 9 299 14-3-3 family AT5G65430 72.9 1.1e-108 389.8
Chy04g00245 CCT 1 242 14-3-3 family AT5G65430 79.8 2.1e-104 375.6
Chy07g00921 . 7 241 14-3-3 family AT5G65430 79.7 4.6e-104 374.4
Chy03g01354 CCT 8 261 14-3-3 family AT5G65430 74.5 2.4e-100 362.1
Chy01g00337 . 1 238 14-3-3 family AT5G65430 69.7 6.5e-90 327.4
Chy10g01053 . 8 245 14-3-3 family AT5G65430 68.5 2.8e-85 312.0
Chy04g00255 CCT,ECH 5 255 14-3-3 family AT5G65430 62.9 2.3e-79 292.4
Chy03g00712 . 119 318 14-3-3 family AT5G65430 70.5 1.8e-76 282.7
Chy03g01367 CCT,ECH 10 128 14-3-3 family AT5G65430 73.9 3.7e-45 178.7
Chy01g00337 . 1 266 14-3-3 family AT2G42590 81.3 1.9e-119 425.6
Chy10g01053 . 6 281 14-3-3 family AT2G42590 70.6 1.6e-102 369.4
Chy04g00255 CCT,ECH 3 264 14-3-3 family AT2G42590 69.1 8.4e-96 347.1
Chy03g00712 . 105 332 14-3-3 family AT2G42590 75.0 1.8e-93 339.3
Chy07g00921 . 8 248 14-3-3 family AT2G42590 73.0 9.6e-92 333.6
Chy04g00245 CCT 8 245 14-3-3 family AT2G42590 70.6 2.6e-89 325.5
Chy03g01354 CCT 8 267 14-3-3 family AT2G42590 65.4 8.4e-88 320.5
Chy04g00220 . 11 258 14-3-3 family AT2G42590 62.5 1.1e-79 293.5
Chy03g01292 . 11 301 14-3-3 family AT2G42590 53.3 2.4e-74 275.8
Chy03g01367 CCT,ECH 10 134 14-3-3 family AT2G42590 80.0 6.7e-53 204.5
Chy03g01366 . 150 272 14-3-3 family AT2G42590 71.5 4.4e-44 175.3
Chy01g00337 . 6 242 14-3-3 family AT1G22300 78.1 6.5e-103 370.5
Chy10g01053 . 5 250 14-3-3 family AT1G22300 76.0 1.0e-100 363.2
Chy04g00255 CCT,ECH 1 260 14-3-3 family AT1G22300 70.4 1.6e-93 339.3
Chy03g00712 . 105 323 14-3-3 family AT1G22300 76.7 1.0e-92 336.7
Chy07g00921 . 5 246 14-3-3 family AT1G22300 70.7 3.3e-91 331.6
Chy04g00245 CCT 8 245 14-3-3 family AT1G22300 69.3 1.0e-87 320.1
Chy03g01354 CCT 8 265 14-3-3 family AT1G22300 65.4 9.4e-86 313.5
Chy04g00220 . 11 258 14-3-3 family AT1G22300 62.4 4.2e-78 288.1
Chy03g01292 . 11 301 14-3-3 family AT1G22300 53.3 2.0e-72 269.2
Chy03g01366 . 148 272 14-3-3 family AT1G22300 79.2 1.2e-48 190.3
Chy03g01367 CCT,ECH 10 133 14-3-3 family AT1G22300 77.4 1.2e-48 190.3
Chy01g00337 . 6 246 14-3-3 family AT1G34760 80.5 4.1e-105 377.9
Chy10g01053 . 5 251 14-3-3 family AT1G34760 79.8 2.2e-103 372.1
Chy03g00712 . 105 326 14-3-3 family AT1G34760 79.3 2.2e-95 345.5
Chy04g00255 CCT,ECH 1 263 14-3-3 family AT1G34760 71.5 2.1e-93 339.0
Chy07g00921 . 5 250 14-3-3 family AT1G34760 71.1 1.1e-89 326.6
Chy04g00245 CCT 8 249 14-3-3 family AT1G34760 69.4 7.7e-88 320.5
Chy03g01354 CCT 8 264 14-3-3 family AT1G34760 67.3 5.5e-86 314.3
Chy04g00220 . 11 257 14-3-3 family AT1G34760 61.1 1.4e-76 283.1
Chy03g01292 . 11 300 14-3-3 family AT1G34760 52.4 8.5e-71 263.8
Chy03g01367 CCT,ECH 8 137 14-3-3 family AT1G34760 81.5 6.8e-52 201.1
Chy03g01366 . 148 272 14-3-3 family AT1G34760 76.0 6.6e-47 184.5
Chy10g01053 . 2 269 14-3-3 family AT1G26480 83.3 2.2e-117 418.7
Chy03g00712 . 105 333 14-3-3 family AT1G26480 86.9 3.2e-108 388.3
Chy01g00337 . 3 242 14-3-3 family AT1G26480 80.0 4.6e-107 384.4
Chy04g00255 CCT,ECH 3 261 14-3-3 family AT1G26480 71.0 3.4e-94 341.7
Chy04g00245 CCT 8 247 14-3-3 family AT1G26480 74.2 1.1e-92 336.7
Chy07g00921 . 2 256 14-3-3 family AT1G26480 71.6 9.3e-92 333.6
Chy03g01354 CCT 8 279 14-3-3 family AT1G26480 67.0 1.5e-89 326.2
Chy04g00220 . 11 254 14-3-3 family AT1G26480 64.3 3.1e-79 292.0
Chy03g01292 . 11 297 14-3-3 family AT1G26480 54.4 1.5e-73 273.1
Chy03g01367 CCT,ECH 13 141 14-3-3 family AT1G26480 76.0 1.2e-49 193.7
Chy03g01366 . 149 272 14-3-3 family AT1G26480 75.0 2.4e-47 186.0
Chy01g00337 . 6 236 14-3-3 family AT1G78220 50.9 3.7e-63 238.4
Chy10g01053 . 5 243 14-3-3 family AT1G78220 51.3 1.4e-62 236.5
Chy03g00712 . 105 316 14-3-3 family AT1G78220 50.2 1.3e-55 213.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003275 3 1 2 3 3 1 2 2 2 2 1 1 2 1 2 1 1 4 2 1 2 2 1 1 0 1 1 2 1 0 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01292 Chy_Chr03 FPKM 10.471735 13.859797 2.112775 1.899321 0.430887 0.110261 0.25514 4.584609 4.180243 3.871668