Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01305 ATGGCGAGGGAGAAAATCAAGATAAAGAAGATTGATAACCTAACGGCGAGGCAGGTGACGTTCTCTAAGCGACGGCGAGGGCTTATCAAGAAGGCTGAGGAGCTGTCGGTCCTCTGCGACGCCGAGGTTGCACTCCTCGTCTTCTCTGCCACCGGAAAGTTTTTTGAGTATTCAAGCTCCAGCATTAAGGATGTTATAGCTAGATATAATTTGCACTCTAGTAACCTTGGAAAGTTGGAATATCCCTCCATCGGGTTGCAGGTTGAAGATAGCAACCACGTCCAATTGAATAAGGAAGTTGAAGATATGAACCAACAACTTAGGCAGATGAGGGGAGAGGATCTTCAAGGATTGAACTTAGAAGATTTGAAGCAATTGGAAAGAAAGCTTGAAGTTGGTCTCACACGAGTTCTTCACACCAAGGAAAACAAGATTATGAGGGAAATTGATGAACTTGAGCTTAAGGGAGCGAGGCTGATGGAAGAAAATAAGATGCTTAAACAGCAGATGTTAAGGCTGTCGAATGAAAGATTAATGGCGGTGCTTGTGGATTCCTCCGACGTTCGTGTGGCTGCGGAAGAAGGAGTTTCGTCGGAATCCGCCGCCAACGTCTATAGCTGCAACAGCGGCCCTCCTGCCGACGACGACAGCTCCGACACCTCTCTCAAATTAGGGCCTCCTTGCCCAAATTGA 693 47.19 MAREKIKIKKIDNLTARQVTFSKRRRGLIKKAEELSVLCDAEVALLVFSATGKFFEYSSSSIKDVIARYNLHSSNLGKLEYPSIGLQVEDSNHVQLNKEVEDMNQQLRQMRGEDLQGLNLEDLKQLERKLEVGLTRVLHTKENKIMREIDELELKGARLMEENKMLKQQMLRLSNERLMAVLVDSSDVRVAAEEGVSSESAANVYSCNSGPPADDDSSDTSLKLGPPCPN* 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16057776 16063967 + Chy3G062850.1 Chy03g01305 223466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01305 230 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Chy03g01305 230 MobiDBLite consensus disorder prediction 199 216 - -
Chy03g01305 230 MobiDBLite consensus disorder prediction 194 230 - -
Chy03g01305 230 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Chy03g01305 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Chy03g01305 230 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy03g01305 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Chy03g01305 230 Coils Coil 142 176 - -
Chy03g01305 230 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Chy03g01305 230 Coils Coil 86 113 - -
Chy03g01305 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Chy03g01305 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Chy03g01305 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Chy03g01305 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 224 - -
Chy03g01305 230 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 224 - -
Chy03g01305 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Chy03g01305 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Chy03g01305 230 Pfam K-box region 92 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01305 Chy-Chr3:16057776 Chy07g01771 Chy-Chr7:21296543 5.51E-53 dispersed
Chy02g00756 Chy-Chr2:4686578 Chy03g01305 Chy-Chr3:16057776 7.82E-87 wgd
Chy02g00774 Chy-Chr2:4800070 Chy03g01305 Chy-Chr3:16057776 1.30E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17725 PF01486 K-box 7.00E-16 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01305 - - csv:101213234 430.639