Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01308 ATGGTTCATCCTGGTTCGACCCAATTTTCACATAAATTGGGGATTCAAAGTGTTCATGGATGCAATAAGTTACATATTAGTGTCAAGGGAAAGGCTCGTCTACATCTTGTTACTATCGTTCCTACATCACTTGGTCTGAGGCACAATCCTGGAAGTCTTCAGCTCTTAAGGGGTGTAAGTCGCCCAATGTATCCTGTGTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTCTGGAATCAGGTGGCGGAGCTGGGACTGCTGTCCTAAAATCTGCAGCTGTGGTTTTGACGAGATCTTGTGATGCCTTACGTAGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTATTGGACCTCTTATGCGCTTGGGGAGGATTCTATTTCTTCATGAGCCAGATGGAAGTTGGAAGAAAAGTAGTACATACTATGTTACGACTTCTTATGTTCAACCTCTACTGCTATGGACTGGAGCTACGCTGATCTGCAGGGCATTGGATCCAGTAGTTTTACCATCGGTAGCCAGTCAGGCAGTCAAACAACGACTTCTGAATTTTGTTAGATCTTTGTCTACTGTTCTGGCATTTGCCTATTGTCTATCAAGCTTGATTCAACAAGTACAAAAGTTTGCTTATGAATCAAATGACCCAGGTGATGCAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCCCTTTCATTGTTCATGGAATTGCTCGGCTTTTCTACTCAGAAGTGGCTCACTGCCGGAGGTCTCGGGACTGTATTGCTTACCCTTGCTGGTCGTGAGATATTTACTAACTTCCTTTCAAGTGTAATGATTCATGCAACACGACCGTTTGTGGTAAATGAATGGATTCAAACAAAGATTGATGGATATGAAGTATCAGGAACGGTTGAGCACGTCGGTTGGTGGTCGCCAACCATCATCCGAGGCGATGATCGTGAAGCGGTTCATATTCCAAATCACAAATTCACTGTTAGTATTGTGAGGAATCTTACCCAGAAAACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTAGATGTTAATAAGATCAATTATATTGTAGCTGACATGCGCAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGTAGAATTTTTTTGGATAACGTCAATCCTGAAAACCAGGCTCTTATGATCATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACCTGTGTGTCAAGGAGGCGATTCTCTTGGATCTTCTCAGAGTTATCAGCCATCATAGGGCCCGGCTCGCCACTCCTATTCGCACTGTTCAGAAAATATATGGCGAGGCTGATTTGGAGAATGTACCATTTGCTGAGACCATGTATTCTCGTTCAGGGGCTACTAACCGTCCTCTGCTTCTTATTGAGCCATCTTATAAAGTCAATGGTGATGACAAAACAAAAGTCTCTAGTCGTCCCGCTCGTTCATCAACTGAAGAAAAGGAAGCCAAACAAGAGGCAGTCTCGATGTCAGGGACAAAAGCCCCCGACACAACTGGATCAACATCAAATCTTGATATGAAAGCAGATGATAAAAAACCAATTTCTCCATCTGGTACTACACCTAAGCCTTCAGCCCCCATTCTATCAACCAGCAGTCCAGAACAAAGCAGCGCGGAAAAGCCAGTAACCAGCAATGAGATAAAAGGAGAAAAGAAAGATCTCCTGGGACTGAATTCCAAAGACAACATGCCACGAGGAACTCCGCCCAAAAGATCGCCTTCAGCTTCCAGTCCAGGGAGCGAGAAAGTTGATATTCCTTCCACAAGCTCGCAAAATAAGCAAGATGGGGAGAAGACGTCTGCATCACCATCAGTGGCGAGGCCACCATTGGAAGAGAATATTGTGCTGGGAGTTGCGTTGGAAGGTTCCAAAAGAACTCTTCCAATTGATGAAGATTTGGATTCAAAAGAAATTTCCACACAGAGGAATGGGAGTGAGTTTCCCCCCAACAGTAAAGATTTGAAAGATGGCCAAATGCCTGCCGTTCCAGGTGCGACGAAAAATGATTGA 2112 43.89 MVHPGSTQFSHKLGIQSVHGCNKLHISVKGKARLHLVTIVPTSLGLRHNPGSLQLLRGVSRPMYPVSSRANVFVCRSVLESGGGAGTAVLKSAAVVLTRSCDALRSSPLLLKLIPAACVIAFAAWGIGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLLWTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCLSSLIQQVQKFAYESNDPGDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNVNPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFAETMYSRSGATNRPLLLIEPSYKVNGDDKTKVSSRPARSSTEEKEAKQEAVSMSGTKAPDTTGSTSNLDMKADDKKPISPSGTTPKPSAPILSTSSPEQSSAEKPVTSNEIKGEKKDLLGLNSKDNMPRGTPPKRSPSASSPGSEKVDIPSTSSQNKQDGEKTSASPSVARPPLEENIVLGVALEGSKRTLPIDEDLDSKEISTQRNGSEFPPNSKDLKDGQMPAVPGATKND* 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16081857 16086913 - Chy3G062880.1 Chy03g01308 223469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01308 703 MobiDBLite consensus disorder prediction 551 577 - -
Chy03g01308 703 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 695 - -
Chy03g01308 703 MobiDBLite consensus disorder prediction 496 703 - -
Chy03g01308 703 Gene3D - 298 353 IPR023408 -
Chy03g01308 703 MobiDBLite consensus disorder prediction 603 635 - -
Chy03g01308 703 Gene3D - 192 296 - -
Chy03g01308 703 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 695 IPR045042 -
Chy03g01308 703 MobiDBLite consensus disorder prediction 578 592 - -
Chy03g01308 703 Pfam Mechanosensitive ion channel 239 446 IPR006685 GO:0016020|GO:0055085
Chy03g01308 703 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
Chy03g01308 703 MobiDBLite consensus disorder prediction 659 673 - -
Chy03g01308 703 MobiDBLite consensus disorder prediction 524 538 - -
Chy03g01308 703 MobiDBLite consensus disorder prediction 496 520 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01308 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101213477 1357.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01308 Chy-Chr3:16081857 Chy06g01600 Chy-Chr6:18425693 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g00156 . 129 505 Mechanosensitive Ion Channel Family AT4G00290 67.1 5.3e-149 524.6
Chy03g01308 . 10 692 Mechanosensitive Ion Channel Family AT5G10490 57.6 1.1e-197 686.8
Chy06g01600 . 102 761 Mechanosensitive Ion Channel Family AT5G10490 54.4 6.4e-182 634.4
Chy03g01308 . 10 672 Mechanosensitive Ion Channel Family AT1G58200 57.8 2.1e-196 682.6
Chy06g01600 . 82 544 Mechanosensitive Ion Channel Family AT1G58200 64.6 1.8e-168 589.7
Chy11g01095 . 43 921 Mechanosensitive Ion Channel Family AT1G53470 55.7 9.1e-261 896.7
Chy11g01095 . 43 921 Mechanosensitive Ion Channel Family AT3G14810 53.1 5.9e-249 857.4
Chy11g01095 . 43 920 Mechanosensitive Ion Channel Family AT1G78610 59.5 1.3e-280 962.6
Chy01g00654 . 59 954 Mechanosensitive Ion Channel Family AT1G78610 55.5 3.4e-273 937.9
Chy11g01095 . 216 921 Mechanosensitive Ion Channel Family AT2G17000 61.4 5.5e-239 824.3
Chy01g00654 . 268 942 Mechanosensitive Ion Channel Family AT2G17000 58.3 6.1e-222 767.7
Chy02g01258 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.2 5.5e-195 677.9
Chy07g00275 . 61 715 Mechanosensitive Ion Channel Family AT5G12080 53.7 1.0e-188 657.1
Chy07g00274 . 73 729 Mechanosensitive Ion Channel Family AT5G12080 52.3 4.9e-175 611.7
Chy07g00276 . 55 702 Mechanosensitive Ion Channel Family AT5G12080 51.2 2.4e-166 582.8
Chy05g00620 . 1 531 Mechanosensitive Ion Channel Family AT5G12080 51.2 3.3e-139 492.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01308 Chy_Chr03 FPKM 4.093117 3.04024 9.82795 8.326196 2.016237 1.524902 1.999127 8.93079 8.592302 9.961149