Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01317 ATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCGACTGTGGCGACACCGGCGAGCCATTGGATAATCGTCTCGTTCGTTATGGAGCTCACTCTCTCGAAGACGGTGGTGGAGTAGGCGCAATGGTCGAGGTTCTCAACCCTGATGCTGTTTATGTTCCCGCCGGTGATGGGTCGGACTTGGCTGTTCAGCGCAGTGATGGTTCGAATCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGACGCTGTCTCTCCCGAGAAGGTTCAAGCAGTGTTGTTGTTGTTGGGTGGTTGCGAATTATCTTCTGGTCAGCAAAGCGTGGATTTGGTAAATCCAAACCAGAGGAATGCTTTGGACTTGCCTGGACGGAGTAGTCAACCTCAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAACGATGTTTCGAAAAGAAAGTTAGATACGGTGTCCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGTTGGATGGTTCGTATAGCCATGGCAATGTCTCAGAGTCAGGTCAAGATGAAAGTCTATCGGAAACTTCATGCACAAATTGTGGCATAAGTTCAATGTCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCATGCGGGCTCTTTTGGGCAAACAGGGGAACTTTAAGGGATCTTCCAAAGAGAAGTCAGGACCATCCGGTGACCCCGGCCGAGCAGTGTGAAAGTGATGGTGGCAAGGACTTAGACTGCAGACATGGTAACCATGCGCCAAGCAATCTCGTTTCTTTCTCAAACGGTGTTAGGGCTTCCCACAAATTCATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAAGAACATGTCCAAGTTCCCTCAATGATGGCGGATGACGACGTTGAATATGAAGATGGCGGCGGCGGCGGCGGCGGCGGCGATGTTATGGATGATGTCGAAGAAGCTCATATGACTTCAGTGAGCGTAGCGAATCATGGGGGGTTGGTTATGGCGTCTAGAACTAGTGAACTTACGCTTTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGAAGTTACTCCCGAAAAGGTACAAGCTGTGCTCTTACTTCTTGGAGGGCGTGATGTGCCAGCAGGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAATTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGACGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACACTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGGACCTTATGCAATGCATGTGGTTTGATGTGGGCGAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTGTCTCTGGATCATATGGAACCTGAAACTCCAATGGATGTCAAGCCTATAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCAGAGGATCCTAGTAAAACCATGACTGAAGGCTCCAGTAATCCTTCCATTGACCTGGATGAAGAAGACATAAACGAAACCACTGGAGAGCTTACAAATTCGTTGCCCATGCGAATTGTCAATCATTCATCAAATGATGATGAGCAGGAACCTCTTGTTGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 1932 48.76 MYARAQPLTMGDQIADCGDTGEPLDNRLVRYGAHSLEDGGGVGAMVEVLNPDAVYVPAGDGSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQRNALDLPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALRMQRNKGQFTSSKKLDGSYSHGNVSESGQDESLSETSCTNCGISSMSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLPKRSQDHPVTPAEQCESDGGKDLDCRHGNHAPSNLVSFSNGVRASHKFMAAANPQPLQARPFQEHVQVPSMMADDDVEYEDGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPEVTPEKVQAVLLLLGGRDVPAGVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPIIMEGEFSGIQDEHGTPEDPSKTMTEGSSNPSIDLDEEDINETTGELTNSLPMRIVNHSSNDDEQEPLVELANPSDTDIDIPTNFD* 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16151628 16165309 + Chy3G062970.1 Chy03g01317 223478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01317 643 ProSitePatterns GATA-type zinc finger domain. 203 230 IPR000679 GO:0006355|GO:0043565
Chy03g01317 643 CDD ZnF_GATA 202 249 IPR000679 GO:0006355|GO:0043565
Chy03g01317 643 ProSitePatterns GATA-type zinc finger domain. 495 522 IPR000679 GO:0006355|GO:0043565
Chy03g01317 643 Pfam CCT motif 424 465 IPR010402 GO:0005515
Chy03g01317 643 Pfam CCT motif 135 177 IPR010402 GO:0005515
Chy03g01317 643 ProSiteProfiles CCT domain profile. 424 466 IPR010402 GO:0005515
Chy03g01317 643 ProSiteProfiles GATA-type zinc finger domain profile. 197 256 IPR000679 GO:0006355|GO:0043565
Chy03g01317 643 CDD ZnF_GATA 494 538 IPR000679 GO:0006355|GO:0043565
Chy03g01317 643 MobiDBLite consensus disorder prediction 601 615 - -
Chy03g01317 643 ProSiteProfiles CCT domain profile. 135 177 IPR010402 GO:0005515
Chy03g01317 643 PANTHER GATA TRANSCRIPTION FACTOR 28 292 643 IPR045280 GO:0006355
Chy03g01317 643 Pfam GATA zinc finger 495 531 IPR000679 GO:0006355|GO:0043565
Chy03g01317 643 Pfam GATA zinc finger 203 239 IPR000679 GO:0006355|GO:0043565
Chy03g01317 643 MobiDBLite consensus disorder prediction 567 643 - -
Chy03g01317 643 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Chy03g01317 643 ProSiteProfiles GATA-type zinc finger domain profile. 489 537 IPR000679 GO:0006355|GO:0043565
Chy03g01317 643 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 490 539 - -
Chy03g01317 643 Gene3D - 198 248 IPR013088 GO:0006355|GO:0008270
Chy03g01317 643 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 292 643 - -
Chy03g01317 643 MobiDBLite consensus disorder prediction 174 199 - -
Chy03g01317 643 Gene3D - 487 545 IPR013088 GO:0006355|GO:0008270
Chy03g01317 643 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 65 256 - -
Chy03g01317 643 SMART GATA_3 489 542 IPR000679 GO:0006355|GO:0043565
Chy03g01317 643 SMART GATA_3 197 250 IPR000679 GO:0006355|GO:0043565
Chy03g01317 643 ProSiteProfiles Tify domain profile. 356 391 IPR010399 -
Chy03g01317 643 PANTHER GATA TRANSCRIPTION FACTOR 28 65 256 IPR045280 GO:0006355
Chy03g01317 643 SMART tify_2 356 391 IPR010399 -
Chy03g01317 643 SMART tify_2 68 103 IPR010399 -
Chy03g01317 643 Pfam tify domain 70 102 IPR010399 -
Chy03g01317 643 Pfam tify domain 359 390 IPR010399 -
Chy03g01317 643 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 200 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00228 Chy-Chr1:1570872 Chy03g01317 Chy-Chr3:16151628 1.70E-63 dispersed
Chy01g02108 Chy-Chr1:25787143 Chy03g01317 Chy-Chr3:16151628 4.66E-58 dispersed
Chy03g01317 Chy-Chr3:16151628 Chy12g01526 Chy-Chr12:19020856 3.67E-08 dispersed
Chy03g01317 Chy-Chr3:16151628 Chy06g00738 Chy-Chr6:5043147 9.03E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17727 PF06203 CCT 2.90E-13 CL0281 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01317 - - csv:101214596 683.715