Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01317 ATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCGACTGTGGCGACACCGGCGAGCCATTGGATAATCGTCTCGTTCGTTATGGAGCTCACTCTCTCGAAGACGGTGGTGGAGTAGGCGCAATGGTCGAGGTTCTCAACCCTGATGCTGTTTATGTTCCCGCCGGTGATGGGTCGGACTTGGCTGTTCAGCGCAGTGATGGTTCGAATCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGACGCTGTCTCTCCCGAGAAGGTTCAAGCAGTGTTGTTGTTGTTGGGTGGTTGCGAATTATCTTCTGGTCAGCAAAGCGTGGATTTGGTAAATCCAAACCAGAGGAATGCTTTGGACTTGCCTGGACGGAGTAGTCAACCTCAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAACGATGTTTCGAAAAGAAAGTTAGATACGGTGTCCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGTTGGATGGTTCGTATAGCCATGGCAATGTCTCAGAGTCAGGTCAAGATGAAAGTCTATCGGAAACTTCATGCACAAATTGTGGCATAAGTTCAATGTCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCATGCGGGCTCTTTTGGGCAAACAGGGGAACTTTAAGGGATCTTCCAAAGAGAAGTCAGGACCATCCGGTGACCCCGGCCGAGCAGTGTGAAAGTGATGGTGGCAAGGACTTAGACTGCAGACATGGTAACCATGCGCCAAGCAATCTCGTTTCTTTCTCAAACGGTGTTAGGGCTTCCCACAAATTCATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAAGAACATGTCCAAGTTCCCTCAATGATGGCGGATGACGACGTTGAATATGAAGATGGCGGCGGCGGCGGCGGCGGCGGCGATGTTATGGATGATGTCGAAGAAGCTCATATGACTTCAGTGAGCGTAGCGAATCATGGGGGGTTGGTTATGGCGTCTAGAACTAGTGAACTTACGCTTTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGAAGTTACTCCCGAAAAGGTACAAGCTGTGCTCTTACTTCTTGGAGGGCGTGATGTGCCAGCAGGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAATTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGACGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACACTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGGACCTTATGCAATGCATGTGGTTTGATGTGGGCGAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTGTCTCTGGATCATATGGAACCTGAAACTCCAATGGATGTCAAGCCTATAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCAGAGGATCCTAGTAAAACCATGACTGAAGGCTCCAGTAATCCTTCCATTGACCTGGATGAAGAAGACATAAACGAAACCACTGGAGAGCTTACAAATTCGTTGCCCATGCGAATTGTCAATCATTCATCAAATGATGATGAGCAGGAACCTCTTGTTGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 1932 48.76 MYARAQPLTMGDQIADCGDTGEPLDNRLVRYGAHSLEDGGGVGAMVEVLNPDAVYVPAGDGSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQRNALDLPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALRMQRNKGQFTSSKKLDGSYSHGNVSESGQDESLSETSCTNCGISSMSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLPKRSQDHPVTPAEQCESDGGKDLDCRHGNHAPSNLVSFSNGVRASHKFMAAANPQPLQARPFQEHVQVPSMMADDDVEYEDGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPEVTPEKVQAVLLLLGGRDVPAGVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPIIMEGEFSGIQDEHGTPEDPSKTMTEGSSNPSIDLDEEDINETTGELTNSLPMRIVNHSSNDDEQEPLVELANPSDTDIDIPTNFD* 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16151628 16165309 + Chy3G062970.1 Chy03g01317 223478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01317 643 ProSitePatterns GATA-type zinc finger domain. 203 230 IPR000679 GO:0006355|GO:0043565
Chy03g01317 643 CDD ZnF_GATA 202 249 IPR000679 GO:0006355|GO:0043565
Chy03g01317 643 ProSitePatterns GATA-type zinc finger domain. 495 522 IPR000679 GO:0006355|GO:0043565
Chy03g01317 643 Pfam CCT motif 424 465 IPR010402 GO:0005515
Chy03g01317 643 Pfam CCT motif 135 177 IPR010402 GO:0005515
Chy03g01317 643 ProSiteProfiles CCT domain profile. 424 466 IPR010402 GO:0005515
Chy03g01317 643 ProSiteProfiles GATA-type zinc finger domain profile. 197 256 IPR000679 GO:0006355|GO:0043565
Chy03g01317 643 CDD ZnF_GATA 494 538 IPR000679 GO:0006355|GO:0043565
Chy03g01317 643 MobiDBLite consensus disorder prediction 601 615 - -
Chy03g01317 643 ProSiteProfiles CCT domain profile. 135 177 IPR010402 GO:0005515
Chy03g01317 643 PANTHER GATA TRANSCRIPTION FACTOR 28 292 643 IPR045280 GO:0006355
Chy03g01317 643 Pfam GATA zinc finger 495 531 IPR000679 GO:0006355|GO:0043565
Chy03g01317 643 Pfam GATA zinc finger 203 239 IPR000679 GO:0006355|GO:0043565
Chy03g01317 643 MobiDBLite consensus disorder prediction 567 643 - -
Chy03g01317 643 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Chy03g01317 643 ProSiteProfiles GATA-type zinc finger domain profile. 489 537 IPR000679 GO:0006355|GO:0043565
Chy03g01317 643 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 490 539 - -
Chy03g01317 643 Gene3D - 198 248 IPR013088 GO:0006355|GO:0008270
Chy03g01317 643 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 292 643 - -
Chy03g01317 643 MobiDBLite consensus disorder prediction 174 199 - -
Chy03g01317 643 Gene3D - 487 545 IPR013088 GO:0006355|GO:0008270
Chy03g01317 643 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 65 256 - -
Chy03g01317 643 SMART GATA_3 489 542 IPR000679 GO:0006355|GO:0043565
Chy03g01317 643 SMART GATA_3 197 250 IPR000679 GO:0006355|GO:0043565
Chy03g01317 643 ProSiteProfiles Tify domain profile. 356 391 IPR010399 -
Chy03g01317 643 PANTHER GATA TRANSCRIPTION FACTOR 28 65 256 IPR045280 GO:0006355
Chy03g01317 643 SMART tify_2 356 391 IPR010399 -
Chy03g01317 643 SMART tify_2 68 103 IPR010399 -
Chy03g01317 643 Pfam tify domain 70 102 IPR010399 -
Chy03g01317 643 Pfam tify domain 359 390 IPR010399 -
Chy03g01317 643 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 200 247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01317 - - - csv:101214596 683.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00228 Chy-Chr1:1570872 Chy03g01317 Chy-Chr3:16151628 1.70E-63 dispersed
Chy01g02108 Chy-Chr1:25787143 Chy03g01317 Chy-Chr3:16151628 4.66E-58 dispersed
Chy03g01317 Chy-Chr3:16151628 Chy12g01526 Chy-Chr12:19020856 3.67E-08 dispersed
Chy03g01317 Chy-Chr3:16151628 Chy06g00738 Chy-Chr6:5043147 9.03E-08 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy01g02108 . 1 230 Tify Gene Family AT3G21175 56.1 2.4e-58 222.2
Chy03g01317 . 45 267 Tify Gene Family AT4G24470 56.9 1.0e-65 247.3
Chy01g00228 . 89 267 Tify Gene Family AT4G24470 59.1 3.4e-48 189.1
Chy01g02108 . 1 265 Tify Gene Family AT1G51600 59.7 2.4e-80 295.8
Chy01g00228 . 86 274 Tify Gene Family AT1G51600 59.9 3.7e-52 202.2
Chy03g01317 . 362 537 Tify Gene Family AT1G51600 59.0 6.9e-51 198.0
Chy03g01317 . 45 267 Tify Gene Family AT4G24470 56.9 1.0e-65 247.3
Chy01g00228 . 89 267 Tify Gene Family AT4G24470 59.1 3.4e-48 189.1
Chy01g02108 . 1 265 Tify Gene Family AT1G51600 59.7 2.4e-80 295.8
Chy01g00228 . 86 274 Tify Gene Family AT1G51600 59.9 3.7e-52 202.2
Chy03g01317 . 362 537 Tify Gene Family AT1G51600 59.0 6.9e-51 198.0
Chy01g02108 . 1 230 Tify Gene Family AT3G21175 56.1 2.4e-58 222.2
Chy05g00381 . 1 180 Tify Gene Family AT4G14713 50.5 2.9e-46 182.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17727 PF06203 CCT 2.90E-13 CL0281 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01317 Chy_Chr03 FPKM 0.576917 1.232147 0.28909 0.0 3.51047 5.629688 3.420834 0.0 0.0 0.0