Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01323 ATGAAAGCAATCTCTTCGTCCCAAACTCAACGTATTAATCTCACTTATATAACTATCCTCAACTTGCCGGAAATAAGACATTACTTCTGTGAGAAAGAATTGGCTTCTCTCTCAAACAGTTGGTCGAAAGCCGTTGACATGCCGCCACTGGGTGTGCAGCTCTTTATTACAGAACGTCAGGTGACAATGGACAATGGCATAGTCCAAGTCACGTTATCAAACCCAGATGGCATAGTAACTGGAATTCAATATGGTGGAGTTGACAACGTGCTCGAAGTCCTAAACGATGAATCTAACCGAGGGTACTGGGACCTCGTGTGGAGCTCATCATCGTCCACAACTGGATTGTTTGATGTGATAAAGGCTAAAGGTTTCGAGGTCATAGTGGAAAATGAAGAACAAGTGGAGCTCTCCTTCACAAGAACATGGGATCTGTCTCTCGAGGGAAAGCTTGTGCCTTTAGAGATTGATAAGAGGTTTATAATGCTCCGGGGTTCGTCTGGGTTCTACTCTTACGCAATTTACCAACACCTGGAAGAATGGCCTGGTTTCAACCTTGGTGAAACTAGACTCGCCTTCAAACTCAGAAAAGACAAGTTCCACTATATGGCCATGGCGGACAACAGACAGAGGTACATGCCACTTCCAGATGACCGTTCTCCGCCTAGAGGTCGAGCCCTGGCATATCCAGAGGCTGTCCTGCTCGTCGACCCCATCGAACCTGAGTTCCAGGGAGAGGTGGATGACAAATATCAGTACTCATGCGATAACAAAGACAGCGGCGTCCATGGATGGATATCCACCGATCCGGCAGTCGGATTCTGGCTAATCTCCCCCAGCAATGAGTTCCGGTCCGGTGGACCTGTTAAACAGAACCTAACTTCACACGTCGGCCCAACCACCCTAGCTGTTTTTATAAGCGCACATTACGCGGGACAGGATCTGCTGCCGAAAATCGGAGCCGGCGAGGCGTGGAAGAAAGTTTTCGGTCCTGTGTTCATCTATCTCAACTCCACTTATGATTCCTTCGACGCACTTCAGCTCTGGGAAGATGCCAAAGCACAGGCAGTGGTCGAAGTCCAAAGTTGGCCCTACAGCTTCCCTGCTTCGGATGATTTTCCAAGGTCAAACCAACGTAGTAATATCAGTGGTAAACTATTAGTCAAGGATAGCTACGTCAATGAAGACTTGATACCAGCAGACGGTGCGTTTGTTGGCCTGGCTCCACCAGGAGACGTAGGATCATGGCAACGAGAGAGCAAGGGTTACCAATTTTGGAGTAGAGCAGATGAAAGTGGAAATTTTTCCATCGATGGCGTGAGGCCGGGGGACTACAATCTGTATGCATGGGTCCCCGGTTTTATCGGAGATTATCGTTATGATGCTCTCATAAACCTTACAGAAGGCAGTGAGGTGGACATGGGAGACATAACATACGAACCTCCGAGACAAGGGGCCACGCTATGGGAAATAGGAATCCCAGATCGCTCCGCAGCAGAGTTCTATGTTCCAGATCCAAATCCCAACTACGTCAATAAGCTCTACCTTAACCATCCTGATAAGTTTCGGCAGTATGGCCTATGGGAAAGATACAGCGAATTGTTTCCCGACTCAGATTTGGTATATACCGTTGGCGTTAGTGACTACACCAAGGATTGGTTCTTTGCTCAGGTCCCCAGGAAGATGGAAAATGGGACATATAAGGGAACAACGTGGCAAGTGAAGTTCGAGCTAGACAACGTAGACAACCAAGCAACTTACAAGCTTCGGGTTGCATTGGCCTCCGCTTCTCTCGCAGAATTGCAGGTTGGAGTTAATGATGCTAAAGCTAAGGCAGTGTTCTCGAGTGGACTTATCGGGAGGGACAATTCGATTGCAAGACACGGCATTCACGGCCTATATTGGGTTTACAACATTGACATTCCTGGAAATCGGCTGGTCACCGGCAATAACACCATCTTCTTCACCCAACCCAGAGGCACAGGCCCTTTCCAAGCCATTATGTACGATTACATTCGTCTGGAAGCTCCTCCACCTCCATCCTCCGCCCATCCTTCGGAATAA 2064 48.26 MKAISSSQTQRINLTYITILNLPEIRHYFCEKELASLSNSWSKAVDMPPLGVQLFITERQVTMDNGIVQVTLSNPDGIVTGIQYGGVDNVLEVLNDESNRGYWDLVWSSSSSTTGLFDVIKAKGFEVIVENEEQVELSFTRTWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLEEWPGFNLGETRLAFKLRKDKFHYMAMADNRQRYMPLPDDRSPPRGRALAYPEAVLLVDPIEPEFQGEVDDKYQYSCDNKDSGVHGWISTDPAVGFWLISPSNEFRSGGPVKQNLTSHVGPTTLAVFISAHYAGQDLLPKIGAGEAWKKVFGPVFIYLNSTYDSFDALQLWEDAKAQAVVEVQSWPYSFPASDDFPRSNQRSNISGKLLVKDSYVNEDLIPADGAFVGLAPPGDVGSWQRESKGYQFWSRADESGNFSIDGVRPGDYNLYAWVPGFIGDYRYDALINLTEGSEVDMGDITYEPPRQGATLWEIGIPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELFPDSDLVYTVGVSDYTKDWFFAQVPRKMENGTYKGTTWQVKFELDNVDNQATYKLRVALASASLAELQVGVNDAKAKAVFSSGLIGRDNSIARHGIHGLYWVYNIDIPGNRLVTGNNTIFFTQPRGTGPFQAIMYDYIRLEAPPPPSSAHPSE* 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16226937 16232486 - Chy3G063030.1 Chy03g01323 223484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01323 687 SUPERFAMILY Starch-binding domain-like 421 473 IPR013784 GO:0030246
Chy03g01323 687 Pfam Polysaccharide lyase family 4, domain II 401 472 IPR029413 -
Chy03g01323 687 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 39 678 - -
Chy03g01323 687 Pfam Polysaccharide lyase family 4, domain III 487 674 IPR029411 -
Chy03g01323 687 SUPERFAMILY Galactose-binding domain-like 485 675 IPR008979 -
Chy03g01323 687 CDD RGL4_N 59 339 - -
Chy03g01323 687 Gene3D - 53 330 IPR014718 GO:0030246
Chy03g01323 687 Gene3D - 484 675 - -
Chy03g01323 687 SUPERFAMILY Galactose mutarotase-like 65 338 IPR011013 GO:0003824|GO:0005975|GO:0030246
Chy03g01323 687 Pfam Rhamnogalacturonate lyase family 51 247 IPR010325 -
Chy03g01323 687 CDD RGL4_C 489 675 - -
Chy03g01323 687 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 39 678 - -
Chy03g01323 687 CDD RGL4_M 378 477 IPR029413 -
Chy03g01323 687 Gene3D - 378 473 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01323 Chy-Chr3:16226937 Chy04g00198 Chy-Chr4:1758057 0 dispersed
Chy02g00408 Chy-Chr2:2571672 Chy03g01323 Chy-Chr3:16226937 0 transposed
Chy02g00773 Chy-Chr2:4789319 Chy03g01323 Chy-Chr3:16226937 0 wgd
Chy03g01323 Chy-Chr3:16226937 Chy04g00196 Chy-Chr4:1740653 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01323 K18195 - csv:101215720 1283.47