Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01325 ATGGCTCCTAGTTTTGACCTTGCTGTTTCTAACCTTTTATGCGCTGAAGAGAATTGCATTTTCGATAATAACGATGGTGATGATGAAACAGTAGTTGAGGAGTTTGTGATGGCTCCTTATTATCTTAGAACTGGTCGGAATCGGAACTCTCGCCGTGACGGCGGTGGTGATGGGTTGCCGTTTATGAGCGATGAATGTTTGATTGAAATGGTTGAGAAGGAAGCCCAGCACTTGCCTGTTGATGGGTACCTTGTGAAGTTGCAAAATGGTGAGTTGGATGTTGGAGCGAGAAAAGAAGCCGTCGATTGGATTGAAAAGGTGAGTGCTCATTTCAGTTTTGGACCTCTCTGTACATACTTAGCTGTAAACTACTTGGATCGATTCCTATCCGCTTACGATCTACCTAAAGGCAAAGCTTGGACAATGCAGTTGCTTGCTGTGGCATGTATGTCCCTTGCGGCCAAATTGGAGGAGACTGAAGTCCCACTCTCTTTGGATTTACAGGTGGGTGGATCAAAATTTGTGTTCGAAGCAAGAACTATTGAAAGAATGGAGCTTTTAGTCTTGACAACACTAGGGTGGAGAATGCAAGCAGTTACACCTTTCTCGTTTATCGATCATTACCTCCACAAGATTCACGACGACAAACTCTCTATCAAAATGTCGATCGCTCGGTCTATTCATCTGCTCTTGAACATAATACAAGGGATTGATTTCTTGGAATTCAAACCATCTGAAATTGCAGCAGCTGTGGCAATATCAGTAGCTGGGGAAGCTCAACCAGTGGACCCTGAGAGAGCAATTCCTCTTCTCATTCAGCAACTCCAAATGGAAAGAGTTATGAAGTGTCTTAAATTAATCAATGACATGTTAACATGTGGTGGTGGGTCAATGAAGGACTCGAGAGTGTCGATGTCGGAGCCCCGGAGCCCGAGCGGGGTGTTGGATGTGACATGTTTAAGCTATAAAAGCAATGATACAGCAGTTGGATCATGTGCAAATTCTTCTCATCATAACAGCTCAGAGGCTACAAAGAGGAGGAGATTGAACAGACCCTGTGAAGTGGAGCTATAG 1074 44.23 MAPSFDLAVSNLLCAEENCIFDNNDGDDETVVEEFVMAPYYLRTGRNRNSRRDGGGDGLPFMSDECLIEMVEKEAQHLPVDGYLVKLQNGELDVGARKEAVDWIEKVSAHFSFGPLCTYLAVNYLDRFLSAYDLPKGKAWTMQLLAVACMSLAAKLEETEVPLSLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLHKIHDDKLSIKMSIARSIHLLLNIIQGIDFLEFKPSEIAAAVAISVAGEAQPVDPERAIPLLIQQLQMERVMKCLKLINDMLTCGGGSMKDSRVSMSEPRSPSGVLDVTCLSYKSNDTAVGSCANSSHHNSSEATKRRRLNRPCEVEL* 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16250589 16252482 + Chy3G063050.1 Chy03g01325 223486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01325 357 MobiDBLite consensus disorder prediction 331 352 - -
Chy03g01325 357 PANTHER CYCLINS 1 349 IPR039361 -
Chy03g01325 357 Pfam Cyclin, C-terminal domain 199 292 IPR004367 -
Chy03g01325 357 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 349 - -
Chy03g01325 357 SUPERFAMILY Cyclin-like 61 196 IPR036915 -
Chy03g01325 357 Pfam Cyclin, N-terminal domain 70 196 IPR006671 -
Chy03g01325 357 SMART Cyclin_C_2 199 323 IPR004367 -
Chy03g01325 357 Gene3D - 80 197 - -
Chy03g01325 357 CDD CYCLIN 97 189 IPR013763 -
Chy03g01325 357 SUPERFAMILY Cyclin-like 182 292 IPR036915 -
Chy03g01325 357 SMART cyclin_7 102 190 IPR013763 -
Chy03g01325 357 Gene3D - 69 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01325 K18810 CYCD1_2_4; cyclin D1/2/4, plant - csv:101216206 680.248
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00890 Chy-Chr2:5739196 Chy03g01325 Chy-Chr3:16250589 4.40E-47 dispersed
Chy03g01325 Chy-Chr3:16250589 Chy07g01733 Chy-Chr7:21018011 8.61E-59 dispersed
Chy11g00792 Chy-Chr11:11308291 Chy03g01325 Chy-Chr3:16250589 4.98E-32 transposed
Chy02g00746 Chy-Chr2:4612117 Chy03g01325 Chy-Chr3:16250589 6.70E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g483 . . . . Bpe02g00135 . . Bma01g02590 Cmo05g00557 . . . . . . . . . . . . . . . Cla08g01149 Cam08g1609 Cec08g1180 Cco08g1306 Clacu08g1308 . Cre08g1092 Cone4ag1308 Cone7ag0848 Cone17ag1189 Cone20ag0545 . . . Cme03g01823 Blo17g00102 . Bda11g00791 Bda13g01369 . Bpe14g00477 . Bma02g00120 . . . . Cma05g00530 Car05g00478 . Cpe11g00467 . . . . . . . . . . . . . . . Lsi08g01007 Csa02g02191 Chy03g01325 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy10g01254 . 1 295 Core Cell Cycle Gene Families AT3G48750 85.4 2.4e-149 525.0
Chy07g00426 . 11 307 Core Cell Cycle Gene Families AT3G48750 53.7 1.3e-94 343.2
Chy08g00540 . 1 309 Core Cell Cycle Gene Families AT3G48750 54.8 1.4e-93 339.7
Chy08g00540 . 1 315 Core Cell Cycle Gene Families AT3G54180 82.1 2.1e-151 531.9
Chy07g00426 . 11 309 Core Cell Cycle Gene Families AT3G54180 66.3 8.7e-118 420.2
Chy10g01254 . 1 290 Core Cell Cycle Gene Families AT3G54180 53.8 7.0e-91 330.9
Chy08g00540 . 1 315 Core Cell Cycle Gene Families AT2G38620 69.5 5.2e-121 430.6
Chy07g00426 . 11 309 Core Cell Cycle Gene Families AT2G38620 57.2 1.3e-92 336.3
Chy07g00426 . 1 307 Core Cell Cycle Gene Families AT1G76540 84.7 3.7e-156 547.7
Chy08g00540 . 1 309 Core Cell Cycle Gene Families AT1G76540 64.4 1.1e-115 413.3
Chy10g01254 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.7 9.9e-93 337.0
Chy07g00426 . 8 307 Core Cell Cycle Gene Families AT1G20930 89.0 1.2e-159 559.3
Chy08g00540 . 1 315 Core Cell Cycle Gene Families AT1G20930 64.9 3.1e-118 421.8
Chy10g01254 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.4 5.6e-96 347.8
Chy05g00037 . 1 514 Core Cell Cycle Gene Families AT5G10270 73.9 3.3e-215 744.6
Chy04g01449 . 84 599 Core Cell Cycle Gene Families AT5G10270 73.1 5.5e-210 727.2
Chy12g01147 . 88 404 Core Cell Cycle Gene Families AT5G10270 53.5 7.4e-98 354.8
Chy02g01127 CCT,ECH 113 431 Core Cell Cycle Gene Families AT5G10270 51.6 1.6e-97 353.6
Chy06g00655 . 105 421 Core Cell Cycle Gene Families AT5G10270 52.6 1.1e-96 350.9
Chy09g00032 . 137 453 Core Cell Cycle Gene Families AT5G10270 52.7 2.4e-96 349.7
Chy10g00271 . 147 463 Core Cell Cycle Gene Families AT5G10270 51.2 1.9e-93 340.1
Chy05g01169 CCT,ECH 101 419 Core Cell Cycle Gene Families AT5G10270 50.7 3.2e-93 339.3
Chy06g01157 . 180 482 Core Cell Cycle Gene Families AT5G10270 54.9 7.1e-93 338.2
Chy12g01523 CCT 120 438 Core Cell Cycle Gene Families AT5G10270 50.7 1.3e-91 334.0
Chy11g01133 . 142 358 Core Cell Cycle Gene Families AT5G10270 56.0 1.1e-69 261.2
Chy05g00037 . 65 512 Core Cell Cycle Gene Families AT5G64960 70.8 3.4e-174 608.2
Chy04g01449 . 148 597 Core Cell Cycle Gene Families AT5G64960 67.2 1.4e-167 586.3
Chy12g01147 . 142 404 Core Cell Cycle Gene Families AT5G64960 53.2 1.8e-82 303.5
Chy06g01157 . 220 482 Core Cell Cycle Gene Families AT5G64960 54.3 2.0e-81 300.1
Chy02g01127 CCT,ECH 167 431 Core Cell Cycle Gene Families AT5G64960 50.7 1.3e-80 297.4
Chy11g01134 CCT,ECH 182 444 Core Cell Cycle Gene Families AT5G64960 53.2 6.3e-80 295.0
Chy06g00655 . 159 421 Core Cell Cycle Gene Families AT5G64960 51.4 1.1e-79 294.3
Chy09g00032 . 191 453 Core Cell Cycle Gene Families AT5G64960 52.9 1.4e-79 293.9
Chy10g00271 . 201 463 Core Cell Cycle Gene Families AT5G64960 51.8 4.5e-78 288.9
Chy11g01133 . 196 358 Core Cell Cycle Gene Families AT5G64960 61.0 6.8e-58 221.9
Chy02g02329 . 4 416 Core Cell Cycle Gene Families AT1G73690 74.1 1.0e-174 609.8
Chy02g02329 . 12 344 Core Cell Cycle Gene Families AT1G66750 76.9 8.5e-154 540.0
Chy02g02329 . 8 417 Core Cell Cycle Gene Families AT1G18040 74.9 4.9e-174 607.4
Chy08g00018 . 30 482 Core Cell Cycle Gene Families AT5G63610 78.0 5.6e-201 697.2
Chy05g01377 . 1 480 Core Cell Cycle Gene Families AT4G28980 63.2 1.7e-173 605.9
Chy03g00762 . 5 503 Core Cell Cycle Gene Families AT1G44110 60.1 1.1e-148 523.5
Chy01g02038 . 225 487 Core Cell Cycle Gene Families AT1G44110 56.3 5.9e-86 315.1
Chy04g00342 . 206 490 Core Cell Cycle Gene Families AT1G44110 51.9 2.6e-81 299.7
Chy07g00171 . 94 373 Core Cell Cycle Gene Families AT1G44110 51.1 1.3e-80 297.4
Chy03g01569 . 90 374 Core Cell Cycle Gene Families AT1G44110 50.9 2.4e-79 293.1
Chy03g01169 . 176 437 Core Cell Cycle Gene Families AT1G44110 53.8 1.6e-75 280.4
Chy01g02038 . 224 487 Core Cell Cycle Gene Families AT1G77390 51.9 9.1e-76 281.2
Chy07g00171 . 99 371 Core Cell Cycle Gene Families AT1G77390 50.5 7.2e-73 271.6
Chy03g01169 . 176 432 Core Cell Cycle Gene Families AT1G77390 51.0 2.4e-68 256.5
Chy04g00342 . 16 502 Core Cell Cycle Gene Families AT5G25380 51.9 1.7e-114 409.8
Chy03g01169 . 9 449 Core Cell Cycle Gene Families AT5G25380 50.7 4.5e-99 358.6
Chy03g00762 . 216 493 Core Cell Cycle Gene Families AT5G25380 54.0 3.9e-79 292.4
Chy07g00171 . 98 366 Core Cell Cycle Gene Families AT5G25380 50.6 8.5e-74 274.6
Chy01g00109 . 120 343 Core Cell Cycle Gene Families AT5G25380 51.6 7.7e-59 224.9
Chy03g01169 . 169 390 Core Cell Cycle Gene Families AT5G11300 69.4 2.8e-79 292.7
Chy03g00762 . 207 440 Core Cell Cycle Gene Families AT5G11300 53.5 1.4e-67 253.8
Chy03g01569 . 92 307 Core Cell Cycle Gene Families AT5G11300 52.3 5.9e-61 231.9
Chy07g00171 . 94 310 Core Cell Cycle Gene Families AT5G11300 54.4 5.9e-61 231.9
Chy01g02038 . 157 487 Core Cell Cycle Gene Families AT1G15570 60.2 5.2e-111 398.3
Chy03g01169 . 172 449 Core Cell Cycle Gene Families AT1G15570 57.9 4.4e-86 315.5
Chy03g00762 . 217 500 Core Cell Cycle Gene Families AT1G15570 53.9 1.2e-78 290.8
Chy01g02038 . 4 487 Core Cell Cycle Gene Families AT1G80370 50.8 6.1e-115 411.4
Chy03g00762 . 217 488 Core Cell Cycle Gene Families AT1G80370 56.6 1.8e-79 293.5
Chy07g00171 . 94 371 Core Cell Cycle Gene Families AT1G80370 50.4 4.2e-76 282.3
Chy03g01569 . 5 372 Core Cell Cycle Gene Families AT5G43080 58.3 3.0e-114 408.7
Chy07g00171 . 1 377 Core Cell Cycle Gene Families AT5G43080 56.3 5.6e-113 404.4
Chy04g00342 . 208 502 Core Cell Cycle Gene Families AT5G43080 50.7 4.5e-78 288.5
Chy03g00762 . 218 503 Core Cell Cycle Gene Families AT5G43080 50.7 6.5e-77 284.6
Chy03g01569 . 1 372 Core Cell Cycle Gene Families AT1G47210 58.9 3.7e-123 438.3
Chy07g00171 . 1 377 Core Cell Cycle Gene Families AT1G47210 55.1 7.1e-114 407.5
Chy01g00109 . 60 351 Core Cell Cycle Gene Families AT1G47210 50.3 5.6e-79 291.6
Chy04g00342 . 208 492 Core Cell Cycle Gene Families AT1G47210 50.2 3.2e-74 275.8
Chy01g02038 . 226 497 Core Cell Cycle Gene Families AT1G47210 50.7 9.3e-74 274.2
Chy07g00171 . 94 374 Core Cell Cycle Gene Families AT1G47220 59.4 4.2e-94 341.7
Chy03g01569 . 78 372 Core Cell Cycle Gene Families AT1G47220 56.3 1.3e-92 336.7
Chy07g00171 . 1 376 Core Cell Cycle Gene Families AT1G47230 58.1 9.8e-116 413.7
Chy03g01569 . 1 372 Core Cell Cycle Gene Families AT1G47230 57.1 4.9e-115 411.4
Chy01g00109 . 66 351 Core Cell Cycle Gene Families AT1G47230 52.8 3.6e-78 288.9
Chy03g00762 . 219 505 Core Cell Cycle Gene Families AT1G47230 50.7 1.9e-74 276.6
Chy01g02038 . 228 497 Core Cell Cycle Gene Families AT1G47230 50.5 1.6e-70 263.5
Chy08g00239 . 7 331 Core Cell Cycle Gene Families AT4G37490 55.3 2.0e-80 296.6
Chy08g00239 . 4 343 Core Cell Cycle Gene Families AT5G06150 53.8 1.9e-78 289.7
Chy02g00511 . 171 338 Core Cell Cycle Gene Families AT5G06150 54.2 1.8e-44 176.8
Chy05g00192 . 25 365 Core Cell Cycle Gene Families AT3G11520 51.4 3.3e-82 302.4
Chy08g00239 . 20 334 Core Cell Cycle Gene Families AT3G11520 56.8 5.3e-80 295.0
Chy02g00511 . 172 398 Core Cell Cycle Gene Families AT3G11520 50.7 1.6e-60 230.3
Chy05g00192 . 14 413 Core Cell Cycle Gene Families AT2G26760 50.5 4.5e-103 371.7
Chy02g00511 . 8 441 Core Cell Cycle Gene Families AT2G17620 60.5 2.1e-130 462.6
Chy07g00389 . 70 471 Core Cell Cycle Gene Families AT2G17620 51.6 1.5e-104 376.7
Chy08g00239 . 169 338 Core Cell Cycle Gene Families AT2G17620 52.3 9.2e-41 164.9
Chy02g00511 . 5 398 Core Cell Cycle Gene Families AT4G35620 58.2 3.0e-104 375.6
Chy07g00389 . 70 426 Core Cell Cycle Gene Families AT4G35620 51.5 9.8e-87 317.4
Chy05g00192 . 139 365 Core Cell Cycle Gene Families AT4G35620 50.9 8.4e-54 208.0
Chy08g00239 . 169 334 Core Cell Cycle Gene Families AT4G35620 52.1 8.2e-41 164.9
Chy07g00389 . 34 469 Core Cell Cycle Gene Families AT1G20610 64.2 3.1e-145 511.9
Chy02g00511 . 1 441 Core Cell Cycle Gene Families AT1G20610 56.1 1.1e-121 433.7
Chy08g00239 . 166 334 Core Cell Cycle Gene Families AT1G20610 51.8 1.2e-43 174.5
Chy07g00389 . 34 366 Core Cell Cycle Gene Families AT1G76310 63.5 9.3e-105 377.1
Chy02g00511 . 1 337 Core Cell Cycle Gene Families AT1G76310 53.6 6.5e-82 301.2
Chy05g00192 . 135 302 Core Cell Cycle Gene Families AT1G76310 52.4 5.6e-41 165.2
Chy01g00850 . 134 583 Core Cell Cycle Gene Families AT1G16330 52.8 1.5e-116 417.2
Chy09g00691 . 1 329 Core Cell Cycle Gene Families AT1G70210 63.2 4.3e-110 394.8
Chy10g00930 . 1 295 Core Cell Cycle Gene Families AT1G70210 63.6 4.5e-99 358.2
Chy07g01733 . 1 186 Core Cell Cycle Gene Families AT1G70210 53.2 1.2e-48 190.7
Chy03g01563 . 51 328 Core Cell Cycle Gene Families AT4G34160 50.7 1.5e-66 250.4
Chy07g00160 . 331 556 Core Cell Cycle Gene Families AT4G34160 51.3 8.6e-59 224.6
Chy01g00082 . 52 282 Core Cell Cycle Gene Families AT4G34160 50.6 3.3e-58 222.6
Chy02g00746 . 49 254 Core Cell Cycle Gene Families AT5G65420 62.3 8.6e-69 257.3
Chy03g01325 . 63 262 Core Cell Cycle Gene Families AT5G65420 56.4 5.1e-61 231.5
Chy02g00746 . 54 230 Core Cell Cycle Gene Families AT5G10440 59.3 3.4e-55 211.8
Chy03g01325 . 58 236 Core Cell Cycle Gene Families AT5G10440 53.3 3.3e-50 195.3
Chy02g00941 . 1 205 Core Cell Cycle Gene Families AT5G27620 69.3 5.9e-79 291.2
Chy12g00760 CCT 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 5.8e-43 169.9
Chy11g00854 CCT 1 82 Core Cell Cycle Gene Families AT2G27960 93.9 1.7e-42 168.3
Chy11g00854 CCT 1 76 Core Cell Cycle Gene Families AT2G27970 92.1 3.7e-39 157.1
Chy12g00760 CCT 1 83 Core Cell Cycle Gene Families AT2G27970 84.3 1.1e-38 155.6
Chy10g01383 . 32 1025 Core Cell Cycle Gene Families AT3G12280 73.1 0.0e+00 1402.5
Chy01g01665 . 2 484 Core Cell Cycle Gene Families AT1G02970 59.0 5.0e-155 544.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004407 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01325 Chy_Chr03 FPKM 1.072917 0.824036 1.913331 2.33176 1.890401 0.712524 0.21138 1.369465 0.869827 1.019402