Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01329 ATGGATTTCTTCTTTTCACCCTGTACTTCTGACTCTGCCATTTCCATCTGCGGCGCCTCCGATTCTCTTTCCTTCCATCTCAAAATCAAACCCAGAAAGCCTTTTCAAATCACACAATTTTCTTATTCCGATCTTCTCTTCTCCACTAATTCATTCTCTCCCGACTGTTTTTTAGGCAAAGGCAGCCACGGCGCTGTTTACAAGGCCGTTCTCGACGGCGGTAAGCTCGTCGCCGCTGTTAAACGTACCAAATTCACAAACCCATCTCCTAGTTTTCACTACAACTCTTGCCAATTACCCAACCACACTCCTGCCGAAAACGAAATCGAGATCCTTTCCCGGCTTCGAAACCCCAGAATCGTGAATCTTATTGGGTTTTGTGCCGATTCAAAGGACGAGAAATTGCTTGTCGTTGAGTTCATGCCCAATGGCTCTCTTTACGATCTGCTCCATTCCCAATCCAGACCGCCCGGTTGGACTCGCCGACTCCGGTTTGCGTTACAGGTCGCAAAAGCGGTTCGAACTCTTCACACGTCCAACCCGCCGGTTATTCATAGAGATATTAAGTCGTCGAACGTTTTGATCGACGGTAACTTCAACGCGCGTCTTGGGGATTTTGGTTTAGCGCTGAGAGGACACGTGGAAGATGTGCGAGTGAGATGTACGCCTCCGGCTGGCACGTTGGGTTATCTTGATCCCGAATATCTCGCACCGGCAGATTTGAGTGTTAAGAGCGACGTTTTTAGTTTTGGGATTTTGCTTTTGGAGATCCTCAGTGGTCGGAATGCTATCGATGTTCACCACAGTCCCCCGTCGGTCGTTGACTGGGCCTTGCCAATGATCAGACATAGTAATTTCGATGGCCTGTGCGACCCACGAATCGGGTCTCCGACTGACCCGGCGGTGATTCGTTGTTTAGCAGTTCTGGCCGCTAAGTGTGTCCGGGCTGCCGTGCAGAAGCGGCCGGATATGGCGGAGGTGGTGGAGTGTTTGAAGGCAGCTAAGAAGAAGTTGCACGTGCCACCGATATGGAACAATTTAAGGCGGCGGAAACGACATGTGGAGAATCTCCAGCCGTTGATTTCAAACTTTGATGAACCCGACGGCTGTGATGAGCCGATGAGGGCTTGCCGGATGGGTAGCCGGAGGAATCGAAAAGTGTCGAATGTTTCGAGTACAGAGTATAGAATTAAGACGAATGGGCGAGTGGTTAGATCGAGATCAATGGGTTCGGTGGAAATTAATTCTATTGTCGGCGGAAATTATTACTGTTCGTTAAGTGGCCGACGAAAACTCAGCGGCGTCGCAATGAAAATTCCGACTATGAAACTTAGTAAATCGAGGTCGGTGGGAGTGTCAGAGAATCCAAAGTTTGTTGAATGTTGTAATCGGAGGGCGGGAGCGTTTTTGCCGGAAATTGAAATGTCGAAATTGATGATTGATTGTGAATCTAAATCTGAGAAACCGTTGTTCCAAAATTAA 1482 48.58 MDFFFSPCTSDSAISICGASDSLSFHLKIKPRKPFQITQFSYSDLLFSTNSFSPDCFLGKGSHGAVYKAVLDGGKLVAAVKRTKFTNPSPSFHYNSCQLPNHTPAENEIEILSRLRNPRIVNLIGFCADSKDEKLLVVEFMPNGSLYDLLHSQSRPPGWTRRLRFALQVAKAVRTLHTSNPPVIHRDIKSSNVLIDGNFNARLGDFGLALRGHVEDVRVRCTPPAGTLGYLDPEYLAPADLSVKSDVFSFGILLLEILSGRNAIDVHHSPPSVVDWALPMIRHSNFDGLCDPRIGSPTDPAVIRCLAVLAAKCVRAAVQKRPDMAEVVECLKAAKKKLHVPPIWNNLRRRKRHVENLQPLISNFDEPDGCDEPMRACRMGSRRNRKVSNVSSTEYRIKTNGRVVRSRSMGSVEINSIVGGNYYCSLSGRRKLSGVAMKIPTMKLSKSRSVGVSENPKFVECCNRRAGAFLPEIEMSKLMIDCESKSEKPLFQN* 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16286431 16287912 + Chy3G063090.1 Chy03g01329 223490

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01329 493 Gene3D Phosphorylase Kinase; domain 1 22 140 - -
Chy03g01329 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Chy03g01329 493 SMART serkin_6 52 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g01329 493 ProSitePatterns Protein kinases ATP-binding region signature. 58 81 IPR017441 GO:0005524
Chy03g01329 493 Gene3D Transferase(Phosphotransferase) domain 1 141 345 - -
Chy03g01329 493 Pfam Protein kinase domain 58 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy03g01329 493 PANTHER - 5 465 - -
Chy03g01329 493 SUPERFAMILY Protein kinase-like (PK-like) 32 331 IPR011009 -
Chy03g01329 493 PANTHER OS01G0750732 PROTEIN 5 465 - -
Chy03g01329 493 ProSiteProfiles Protein kinase domain profile. 52 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01329 - - - csv:101208276 949.888
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01329 Chy-Chr3:16286431 Chy04g01231 Chy-Chr4:18839147 7.76E-127 dispersed
Chy03g01329 Chy-Chr3:16286431 Chy12g00200 Chy-Chr12:2404994 1.44E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g480 . . Bda01g00901 . . . . . . . . . . . . . . Bhi04g00811 . . . . . Lcy13g1503 Cla08g01146 . . . . . . . . Cone17ag1191 . . . . Cme03g01826 . . Bda11g00788 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01004 Csa02g02188 Chy03g01329 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012718 2 1 0 0 0 0 1 0 0 1 1 0 1 1 0 1 0 1 1 0 1 0 0 0 0 1 1 1 0 1 16
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71145 PF00069 Pkinase 5.80E-38 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01329 Chy_Chr03 FPKM 34.084923 35.02005 53.393833 53.750523 21.334188 20.895767 19.614254 105.638351 106.876801 111.590485