Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01330 ATGGAATTCGACGAGGAGAACGACGAGGAAATAATGGATGAGATGCCAATCGCCACTCACCACTACGACTCGCTCACTAACTCAGCTTCAACTCGGCCAAAACCTGGTGAAGGTGCTTCAACAGCGAGAAAAACCAGTAGTATTAGATATAGAGAGTGTTTGAAGAATCACGCCATCGGAATCGGCGGACACGCGGTGGACGGTTGCGGCGAGTTTATGCCGGCGGGAGAAGAAGGAAGTATAGACGCACTGAAATGCGCCGCCTGTAACTGCCACCGAAATTTTCACCGGAAAGAAACGGATTCAGATCAAGGACATTACTATTACCAACAACAACAACAACAAATTTGTCCATATCGTGGGCCCACGCCACACCCATCTGCTTACGTGTACATGAGGGGGGCCCCAGTTCAACAAAGGGCGTTGGCGTTGCCGGCAGCAGCCGGGGGGAGGGAAGAGGACGACACGTCGAATCCGAGTAGTAGCGGTGGCGGCGGCGGAAGTGGAACTGGGTTGTTGTTGAAGAAGAGATTTAGGACAAAGTTTAGTTCAGAGCAAAAGGAGAAAATGTTAGAGTTTGCGGAGAAAGTTGGATGGACAATTCAGAAACACGACGAAGCTGATGTCGAACGATTCTGTACGGAAACCGGAGTCCGGCGGCAAGTACTTAAGGAACTAAGTTTTGGTTGTGTTGGTAACCAATGGGAAAGAAGAGAAAGAGAGAATGAATCTTTGGAAGTGGATTTTGGTGGCAAAAGTGAAGAACATGAATGTAGTTCAAGTCTTGAGCTTGGTCCGGTGTCGGGACAATCATGTCAATATTGA 825 48.73 MEFDEENDEEIMDEMPIATHHYDSLTNSASTRPKPGEGASTARKTSSIRYRECLKNHAIGIGGHAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYQQQQQQICPYRGPTPHPSAYVYMRGAPVQQRALALPAAAGGREEDDTSNPSSSGGGGGSGTGLLLKKRFRTKFSSEQKEKMLEFAEKVGWTIQKHDEADVERFCTETGVRRQVLKELSFGCVGNQWERRERENESLEVDFGGKSEEHECSSSLELGPVSGQSCQY* 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16297386 16299052 + Chy3G063100.1 Chy03g01330 223491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01330 274 MobiDBLite consensus disorder prediction 241 262 - -
Chy03g01330 274 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 50 99 IPR006456 -
Chy03g01330 274 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 31 224 - -
Chy03g01330 274 SUPERFAMILY Homeodomain-like 161 224 IPR009057 -
Chy03g01330 274 MobiDBLite consensus disorder prediction 241 259 - -
Chy03g01330 274 MobiDBLite consensus disorder prediction 21 44 - -
Chy03g01330 274 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 49 99 IPR006456 -
Chy03g01330 274 MobiDBLite consensus disorder prediction 143 172 - -
Chy03g01330 274 Gene3D - 159 226 - -
Chy03g01330 274 Pfam ZF-HD protein dimerisation region 48 100 IPR006456 -
Chy03g01330 274 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 31 224 - -
Chy03g01330 274 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 175 224 IPR006455 -
Chy03g01330 274 MobiDBLite consensus disorder prediction 1 44 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01330 - - - csv:101216697 411.764
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01330 Chy-Chr3:16297386 Chy03g01454 Chy-Chr3:17118515 2.49E-50 dispersed
Chy02g00745 Chy-Chr2:4605793 Chy03g01330 Chy-Chr3:16297386 2.23E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g479 . Blo12g00721 . . Bpe02g00132 . . Bma01g02594 Cmo05g00555 . . . . . Sed04g0182 . . Bhi04g00810 Tan02g2444 Cmetu03g1591 . Hepe10g0451 . Lcy13g1504 . . . . . . . . . Cone17ag1192 . . . . Cme03g01827 . . Bda11g00787 . . . . . . . . . Cma05g00527 Car05g00476 . Cpe11g00465 . . . . . . . . . . . . . . . Lsi08g01003 Csa02g02187 Chy03g01330 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17728 PF04770 ZF-HD_dimer 2.60E-30 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01330 Chy_Chr03 FPKM 4.634259 4.148458 0.896693 1.553724 5.734704 3.840726 5.079392 0.272932 0.248134 0.098393