Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01336 ATGAAACGCCTCGGCTGGCTAGGGCTGTGCCGGCGGCAATTACTTTCATCTGAAGGCGTAGGGCCGTCCATTGACTTACGACTCTCGCTCGGAAAAGTTTCATCGTTACGCCAGTTTTTTACATGTGCTAGAGCGTTGCAAGCATTTCCTTCTGCCGTAGGGAACGGTCCTGACTTTGCCACAGCATTTCCGGGGAGTAGACGTTTCATACATAGCACAGGATCATGTCGTTCTATCGAACGAGATTACTATGAAATTCTGGGGGTTCAACACAATGCCAGTCGAGAAGAGATTAAAAAGGCATATCATGCGTTGGCGAAAAAGTACCATCCGGATGCAAATAAGAACAATCCTTCTGCCAAAAGGAAATTTCAGGAGATAAGAGAAGCCTATGAGACTCTGCAGGATTCTGAGAAGAGATCCCAATATGACCAGAGGCATGGTGGAGAGTCTGCGAATGTAGGGTTTGGTGCTGGTGATGCGGAGGGGTTTAGCTATACTTATCGTACCCATTTTTCTGACTCATTTCAAAAGATTTTCTCCGAGATCTTTGAACATGAGACCGGCCGTCTTCCCTCAGATATTCAGGTTGACCTGCTGTTATCTTTTGCTGAAGCTGCAAAAGGATGCACTAAGGATTTGTCCTTTGATGCTTTGGTTCCCTGTGATTCTTGCTATGGGCGTGGCTATCCAGTAAATGCATCGAAAAGAAGCTGCCCTACTTGCAGAGGTTTAGGTAGAGTTACTATTCCTCCATTTACATCGATGTGCACCACTTGCCGAGGATCAGGTCAAATCATTGAGGAATCATGTGGGCAATGCAAGGGAATGGGGGTTGTAGAGGGTGTCATGAAGGTTACAGTTACTATACCTGCTGGGGTTGATTCTGGAGATACCATTCGTGTACCAGAAGCTGGTAATAGTGGCGGAAAAGATACTCATCCTGGCAACTTGATCATTAAATTGAAGGTTGCTGAAGATCACGTCTTTAAGAGAGATGGTGTGGATATATATGTGGATTCTAATATCAGCTTTACTCAAGCTATTCTTGGGGGCAAGGTTGAGGTTCCAACATTGTCAGGCAGGATGCAAATAGAAGTACCAAAAGGGGTTCAACCAGGACAGCTATTAACACTGAGAGGGAAAGGATTGCCGAAACATGGATTTTTTGTTGATCGTGGAGATCAGTATGTGCGATTCCGTATTAAATTTCCAACTGAAATAAGTGAACGCCAGCGTGCCATTTTAGAAGAGTTTGCTGAAGAAGAAATAAAGCATGGGATTGGCAACTCAAATGAAGCAAGTTGGAGAATGTTGGGAAGAAGTCTGAACAGGGGAGGTGAGATCATGCAGCAGGAAATACCCATTTTCAAAGGTAAAGATCTGTATGGATCCAATTCATTTCTTACTCAGTGGCTTCTTTACCTACTCTTCTATTCTGATTGTAATGAAGATCCTGAAATGAAAACAGGCTTTATCAGCAGCTCTCTACTGGTTGAACTTTCAGGTGGCAACGAATTGTTAACCATGTTGGGGAACCTATGTTTGTTCTTGAACTGTCCCTATTGA 1569 44.04 MKRLGWLGLCRRQLLSSEGVGPSIDLRLSLGKVSSLRQFFTCARALQAFPSAVGNGPDFATAFPGSRRFIHSTGSCRSIERDYYEILGVQHNASREEIKKAYHALAKKYHPDANKNNPSAKRKFQEIREAYETLQDSEKRSQYDQRHGGESANVGFGAGDAEGFSYTYRTHFSDSFQKIFSEIFEHETGRLPSDIQVDLLLSFAEAAKGCTKDLSFDALVPCDSCYGRGYPVNASKRSCPTCRGLGRVTIPPFTSMCTTCRGSGQIIEESCGQCKGMGVVEGVMKVTVTIPAGVDSGDTIRVPEAGNSGGKDTHPGNLIIKLKVAEDHVFKRDGVDIYVDSNISFTQAILGGKVEVPTLSGRMQIEVPKGVQPGQLLTLRGKGLPKHGFFVDRGDQYVRFRIKFPTEISERQRAILEEFAEEEIKHGIGNSNEASWRMLGRSLNRGGEIMQQEIPIFKGKDLYGSNSFLTQWLLYLLFYSDCNEDPEMKTGFISSSLLVELSGGNELLTMLGNLCLFLNCPY* 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16323090 16334251 + Chy3G063160.1 Chy03g01336 223497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01336 522 CDD DnaJ 82 136 IPR001623 -
Chy03g01336 522 Hamap Chaperone protein DnaJ [dnaJ]. 79 462 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Chy03g01336 522 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 34 444 - -
Chy03g01336 522 SUPERFAMILY HSP40/DnaJ peptide-binding domain 192 333 IPR008971 GO:0006457|GO:0051082
Chy03g01336 522 Gene3D - 326 433 - -
Chy03g01336 522 SUPERFAMILY Chaperone J-domain 81 172 IPR036869 -
Chy03g01336 522 Pfam DnaJ domain 82 144 IPR001623 -
Chy03g01336 522 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 209 280 IPR036410 -
Chy03g01336 522 CDD DnaJ_C 193 408 - -
Chy03g01336 522 Pfam DnaJ C terminal domain 195 405 IPR002939 -
Chy03g01336 522 Gene3D - 253 286 - -
Chy03g01336 522 ProSiteProfiles dnaJ domain profile. 82 147 IPR001623 -
Chy03g01336 522 ProSiteProfiles Zinc finger CR-type profile. 209 283 IPR001305 GO:0031072|GO:0051082
Chy03g01336 522 MobiDBLite consensus disorder prediction 135 154 - -
Chy03g01336 522 ProSitePatterns Nt-dnaJ domain signature. 124 143 IPR018253 -
Chy03g01336 522 SUPERFAMILY HSP40/DnaJ peptide-binding domain 329 416 IPR008971 GO:0006457|GO:0051082
Chy03g01336 522 SMART dnaj_3 81 139 IPR001623 -
Chy03g01336 522 CDD DnaJ_zf 222 278 IPR001305 GO:0031072|GO:0051082
Chy03g01336 522 PANTHER CHAPERONE PROTEIN DNAJ 1, MITOCHONDRIAL 34 444 - -
Chy03g01336 522 Gene3D - 193 322 - -
Chy03g01336 522 Gene3D DnaJ domain 79 192 IPR036869 -
Chy03g01336 522 PRINTS DnaJ domain signature 84 102 IPR001623 -
Chy03g01336 522 PRINTS DnaJ domain signature 102 117 IPR001623 -
Chy03g01336 522 PRINTS DnaJ domain signature 139 158 IPR001623 -
Chy03g01336 522 PRINTS DnaJ domain signature 119 139 IPR001623 -
Chy03g01336 522 Gene3D - 218 251 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01336 - - - csv:101208756 853.203
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01887 Chy-Chr1:24202350 Chy03g01336 Chy-Chr3:16323090 1.08E-87 dispersed
Chy03g01336 Chy-Chr3:16323090 Chy10g01224 Chy-Chr10:16909930 2.56E-37 dispersed
Chy01g00267 Chy-Chr1:1865345 Chy03g01336 Chy-Chr3:16323090 1.95E-13 transposed
Chy03g00571 Chy-Chr3:8141145 Chy03g01336 Chy-Chr3:16323090 1.87E-14 transposed
Chy04g01380 Chy-Chr4:20439912 Chy03g01336 Chy-Chr3:16323090 7.09E-14 transposed
Chy05g00913 Chy-Chr5:13655648 Chy03g01336 Chy-Chr3:16323090 4.15E-10 transposed
Chy07g00914 Chy-Chr7:12955368 Chy03g01336 Chy-Chr3:16323090 6.98E-67 transposed
Chy07g01569 Chy-Chr7:19909335 Chy03g01336 Chy-Chr3:16323090 3.12E-64 transposed
Chy09g00353 Chy-Chr9:3076619 Chy03g01336 Chy-Chr3:16323090 1.11E-09 transposed
Chy11g00360 Chy-Chr11:3289153 Chy03g01336 Chy-Chr3:16323090 3.69E-13 transposed
Chy12g01585 Chy-Chr12:19351324 Chy03g01336 Chy-Chr3:16323090 2.09E-56 transposed
Chy03g01336 Chy-Chr3:16323090 Chy04g00217 Chy-Chr4:1978907 2.41E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g470 . . Bda01g00899 . . . . . Cmo05g00549 . . . . . . . . Bhi04g00799 . . . . . Lcy13g1511 Cla08g01139 Cam08g1598 Cec08g1169 Cco08g1296 Clacu08g1298 . Cre08g1081 . Cone7ag1258 . . . . . Cme03g01833 . Blo18g00120 . . . . Bma01g01394 . . . . . Cma05g00520 Car05g00471 . . . . . . . . . . . . . . . . . Lsi08g00997 Csa02g02181 Chy03g01336 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011221 1 3 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01336 Chy_Chr03 FPKM 40.437366 45.709133 21.87537 22.711018 16.381023 16.805502 18.844929 38.347145 36.588207 39.19323