Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01342 ATGATGGCGTTGGAAACTGTGGTTTACCCACAAGATACATTCAGTTATGTTTGCAGGGATTTCTGTTCTTACGCCGGAGGACCACCTTGGGGTACCTACGACTATGCCTTTCAATTTGAAGAACAAAAAGCTTTTCTTGGACTCATTGAAAACCAAACACAGGACCAAAAATGGGAGCCTTCACCCGACGAATCTTCAATCAATCACCCACTCCCCGCAGGAGGATCTCTTTACCCGCCGCTGGAGCTAGAGCCAACACCAACACCAACACCACCGCCACCACCAACCACAGGAAGAAGAAAACGACGGCGGACTCGTAGTACGAAAAACAAAGAAGAAATTGAAAACCAGAGGATGACTCACATCGCCGTGGAGCGTAATCGGCGGAAGCAAATGAATGAATATCTTGCCGTTCTCCGATCATTAATGCCATCTTCTTACGTTCAAAGGGGAGACCAAGCTTCCATTATTGGTGGTGCCATTAACTTTGTCAAGGAATTAGAACAACAATTACAATTCATTAAAGTCCATAAAGAACAAACTGATACCTCCCCTTTTGCCGATTTCTTTTCCTTCCCTCAATACTCAACTCGTGCCACAACTCAGTCCAAGAACAACAACTCGCCCCATGACTCATCCATTGCTCACACTCAATGGCCGGCCGGAGACATTGAAGTCACCATGGTCGATACTCATGCCAACCTTAAAATACTTTCCCAAAAACGACCCAGGCAGCTCCTCAAAATGGTGGCTGGATTTCAAAGCTTGAGACTTACTATTCTTCATCTCAATGTCACTACTTCAGATCAAATGGTTCTTTATTCTCTAAGTATTAAGTTGAATACAGTGGATGAAATTGCTGCAGCTGTGAATCAAATCCTACTTTCAATTCAAGAGGAAGCTGTTTATAGCTGA 915 44.15 MMALETVVYPQDTFSYVCRDFCSYAGGPPWGTYDYAFQFEEQKAFLGLIENQTQDQKWEPSPDESSINHPLPAGGSLYPPLELEPTPTPTPPPPPTTGRRKRRRTRSTKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQQLQFIKVHKEQTDTSPFADFFSFPQYSTRATTQSKNNNSPHDSSIAHTQWPAGDIEVTMVDTHANLKILSQKRPRQLLKMVAGFQSLRLTILHLNVTTSDQMVLYSLSIKLNTVDEIAAAVNQILLSIQEEAVYS* 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16392434 16393739 + Chy3G063220.1 Chy03g01342 223503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01342 304 Gene3D - 109 181 IPR036638 GO:0046983
Chy03g01342 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 167 IPR011598 GO:0046983
Chy03g01342 304 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 2 302 - -
Chy03g01342 304 PANTHER MAX DIMERIZATION, MAD 2 302 - -
Chy03g01342 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 182 IPR036638 GO:0046983
Chy03g01342 304 SMART finulus 122 173 IPR011598 GO:0046983
Chy03g01342 304 Pfam Helix-loop-helix DNA-binding domain 117 168 IPR011598 GO:0046983
Chy03g01342 304 MobiDBLite consensus disorder prediction 53 113 - -
Chy03g01342 304 MobiDBLite consensus disorder prediction 82 96 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01342 Chy-Chr3:16392434 Chy05g01131 Chy-Chr5:15809475 2.71E-80 dispersed
Chy03g01342 Chy-Chr3:16392434 Chy06g02143 Chy-Chr6:25749137 5.20E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17729 PF00010 HLH 4.20E-10 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01342 - - csv:101218813 536.569