Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01343 ATGGCGGTTACACTCAGCAGAAAGCTTTTTCCAGTTGCCACTGGAACTGCCCTACCAACTACTAATTGTTCCTCCTGCCCTTACGACTGCCCTTACGACTGTTACGGTTTTCCTGATCTCTACTTCTCGCCCCCGCCACCACCCCCTCCTCTTTCCGACCACCAAAAACAGCTTCCAACTACGATCATCGTCCTAATTCTCTTCATCGCCTTTTTCGTAGCTTTTACTTTCTACATCATCGTCGTAAAATGTCGATCTTGGTACTCTGGCTCCGCCAACGACGGAGCAGAGGCGTTGCAATCAGACGGCGGAGAAGGAGAGTTTATGAACGAGAATCAAGTGGATCATCCAATTTGGTTCATCACCACCGCTGGACTTCAACAATCAGTCATCAATTCCATTACGGTTTGCAAGTACAAGAAGAGCGAAGGTTTAATTGAAGGAACGGATTGCTCTGTTTGTTTGAGTGAATTTCAAGAAGACGAAATGCTTCGGTTGTTACCAAAATGTAGCCACGCGTTTCATATTGGTTGTGTTGATACTTGGCTAAGAACGCACACCACTTGCCCTCTCTGTCGAGCTCATATTCTTACTGATTTCACCACCCCCAACTCGGTAAGGCCACCAAATATAGGTCCATTGAATCAAAACGAAGGTAGTTTGGGTTTAAATGAAGATACCCAGATGGAGAATGAGAATACTAACCGGGAAGCTGTAAGGGAAAATGAAGGTGGTGGTGTTTCTATTTCTAGTGAGAGCTCTGAAAACAGAGGAGATGTTGTTGATGAACAAAGAGAAGTTGAGGAGATAGTTCAAAAAGAAGGGAATTTTGAATCTGATGATTCAAAAGCCGAAGGAAATGAAAGTATGGGGAACGATAATCAACTGAATTCATCTTCAACAACAACAACAACAACAACATGA 924 43.83 MAVTLSRKLFPVATGTALPTTNCSSCPYDCPYDCYGFPDLYFSPPPPPPPLSDHQKQLPTTIIVLILFIAFFVAFTFYIIVVKCRSWYSGSANDGAEALQSDGGEGEFMNENQVDHPIWFITTAGLQQSVINSITVCKYKKSEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTTPNSVRPPNIGPLNQNEGSLGLNEDTQMENENTNREAVRENEGGGVSISSESSENRGDVVDEQREVEEIVQKEGNFESDDSKAEGNESMGNDNQLNSSSTTTTTTT* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16398072 16398995 - Chy3G063230.1 Chy03g01343 223504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01343 307 SMART ring_2 151 192 IPR001841 -
Chy03g01343 307 SUPERFAMILY RING/U-box 141 202 - -
Chy03g01343 307 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Chy03g01343 307 MobiDBLite consensus disorder prediction 202 307 - -
Chy03g01343 307 SMART FANCL_C_2 147 201 - -
Chy03g01343 307 MobiDBLite consensus disorder prediction 288 307 - -
Chy03g01343 307 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 9 286 IPR044675 -
Chy03g01343 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 199 IPR013083 -
Chy03g01343 307 CDD RING-H2_PA-TM-RING 150 193 - -
Chy03g01343 307 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 286 - -
Chy03g01343 307 MobiDBLite consensus disorder prediction 256 287 - -
Chy03g01343 307 MobiDBLite consensus disorder prediction 202 229 - -
Chy03g01343 307 Pfam Ring finger domain 150 193 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01343 Chy-Chr3:16398072 Chy05g00954 Chy-Chr5:14134723 2.76E-26 dispersed
Chy04g00102 Chy-Chr4:969680 Chy03g01343 Chy-Chr3:16398072 3.98E-45 transposed
Chy05g00624 Chy-Chr5:7628369 Chy03g01343 Chy-Chr3:16398072 2.80E-38 transposed
Chy06g00331 Chy-Chr6:2210408 Chy03g01343 Chy-Chr3:16398072 1.32E-41 transposed
Chy11g01272 Chy-Chr11:18932987 Chy03g01343 Chy-Chr3:16398072 2.62E-20 transposed
Chy02g00737 Chy-Chr2:4541780 Chy03g01343 Chy-Chr3:16398072 1.19E-43 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01343 - - csv:101209492 567.77