Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01359 ATGGCTTCCTCTACTTTTATTACATCAATGATCCGCTTCTTCATCGCTATCTCCCTCTTCCAAATCTCCGCCTCGCGTATGCTAAGCGAGTTAATTCCCGACCAAACCCAATCTCTTAAATACCACAATGGAGCTCTTCTTTCCGGCAAAATCAGCGTCAATCTCATTTGGTATGGCAAGTTCAAGCCTTCCCAAAAAGCAATCGTTTCCGATTTCATCAGCTCTCTCTCTTCCTCTCGCCCTCAAGTCACCGAACCATCGGTTTCCACTTGGTGGAAACTGACGGAGAAGTATTACAAGAAGAAATCGAGTCCCCTGTTTCTCAATCTCGGCAAGCAAATCTTGGATGAGAATTGCTCGTTGGGGAAATCACTAACCAACAAACAAATCCTTCAATTGGCTTCAAAGGGTGAGCAAAGAAACGCCATTAATGTCGTTTTAACAGCTTCTGATGTTACTGTTGATGGGTTCTGTATGAGCCGTTGTGGAACTCATGGGTTTGGTTCTGCCGTCCGCCGAGGTAGCGGTGGAGTCAAAGGAAAGAACTATAAATTTGCTTACATTTGGGTTGGAAATTCCGAGACGCAATGCCCTGGACATTGTGCTTGGCCATTTCATCAGCCGATGTATGGACCACAATCGCCGCCATTGATTGCTCCTAACGGCGATGTGGGAATGGACGGAATGATTATTAACCTTGCTAGTCTTTTGGCTGGAACTGCTACAAATCCGTTTGGTAACGGCTATTTTCAAGGTCCAGCGGAGGCGCCATTAGAGGCGGCGTCTGCATGTACTGGGGTTTATGGGAAAGGGGCTTACCCAGGTTACGCCGGGGAGTTGTTGACGGATTCAGTCACCGGTGGAAGCTATAATGCTAATGGCGGTGGACGGAAATATCTGCTTCCGGCTTTATACGATCCTTCTACATCGGCTTGTTCGACTTTAGTTTAA 951 46.9 MASSTFITSMIRFFIAISLFQISASRMLSELIPDQTQSLKYHNGALLSGKISVNLIWYGKFKPSQKAIVSDFISSLSSSRPQVTEPSVSTWWKLTEKYYKKKSSPLFLNLGKQILDENCSLGKSLTNKQILQLASKGEQRNAINVVLTASDVTVDGFCMSRCGTHGFGSAVRRGSGGVKGKNYKFAYIWVGNSETQCPGHCAWPFHQPMYGPQSPPLIAPNGDVGMDGMIINLASLLAGTATNPFGNGYFQGPAEAPLEAASACTGVYGKGAYPGYAGELLTDSVTGGSYNANGGGRKYLLPALYDPSTSACSTLV* 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16482353 16483303 - Chy3G063390.1 Chy03g01359 223520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01359 316 Pfam Phosphate-induced protein 1 conserved region 39 315 IPR006766 -
Chy03g01359 316 PANTHER PROTEIN EXORDIUM-LIKE 5 7 316 IPR006766 -
Chy03g01359 316 PANTHER PROTEIN EXORDIUM-RELATED 7 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01359 - - - csv:101221106 628.246
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01359 Chy-Chr3:16482353 Chy04g00248 Chy-Chr4:2211167 3.41E-134 dispersed
Chy03g01359 Chy-Chr3:16482353 Chy03g01361 Chy-Chr3:16492344 8.46E-117 proximal
Chy01g00593 Chy-Chr1:4245033 Chy03g01359 Chy-Chr3:16482353 6.53E-47 transposed
Chy06g00866 Chy-Chr6:6249595 Chy03g01359 Chy-Chr3:16482353 3.65E-52 transposed
Chy07g00829 Chy-Chr7:10573256 Chy03g01359 Chy-Chr3:16482353 4.84E-119 transposed
Chy11g00769 Chy-Chr11:10679611 Chy03g01359 Chy-Chr3:16482353 1.56E-47 transposed
Chy12g00510 Chy-Chr12:6947051 Chy03g01359 Chy-Chr3:16482353 3.20E-47 transposed
Chy03g01359 Chy-Chr3:16482353 Chy04g00247 Chy-Chr4:2206808 1.15E-116 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g432 . . . . . . . Bma01g02608 . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1328 Cone7ag1269 . . Lsi04g02243 . . Cme03g01857 . Blo18g00130 . Bda13g01397 . . . Bma02g00137 . . . Cma12g00164 . . . . Cpe02g00368 Bhi09g02446 Tan01g3798 Cmetu04g0771 . Hepe01g2135 Mch11g0673 . . . . . . . . . . Chy03g01359 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000841 2 4 5 3 3 1 3 3 2 3 3 3 2 3 3 2 3 5 3 2 3 3 3 4 4 4 3 1 4 1 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01359 Chy_Chr03 FPKM 24.888714 24.38558 41.877594 45.833134 35.245216 31.274759 36.638378 89.900589 89.855774 88.224602