Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01393 ATGTCGAAGGCCGTCGAGGATCTCATCTTCCGCCACCGCCACTCTGATTTTCGATTTCATCTCCTTATCTCTCACTCTAACCATCGCGACATGTCGTCTTTTGCTTCTTCTTCCTCAGCTCTAGCTCTTCCGCCTCAGTGTTGTCTTCAGTACCATCGGCCTTCTTCACCGTCGGATCAGTCCAACGCTTGCGACGGCCGTCTATCTTCCGAGGCACATTCTACAGTTTCTACGATAGATTTGAAACGAGCATACGATATTAATAACTCCGAGGCTTTGGCTAGCAGACAAGTTGTAGCCTCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAGAAATTTAAGTTGCAGAAAAATTCGAAGTCTAAGACTCGAAAATCAATAGATGAGCCTGTCGATAGTCCTAATCAATCTACTAACGGTCGGTATGACAGCTCGTTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGAATTTATGATATTACAAATGTTCTTGAAGGAATAGGCCTCATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGAGGCGAGAGGCGTGGAACTCAAGAGCTCAACGATCAAGTTGGTAGATTAAAGGATGAAGTTAAAAGTTTATATGCAGATGAACGCAGACTTGATGAACTCATAAGGTTGGTTCGGTTTTAG 777 42.6 MSKAVEDLIFRHRHSDFRFHLLISHSNHRDMSSFASSSSALALPPQCCLQYHRPSSPSDQSNACDGRLSSEAHSTVSTIDLKRAYDINNSEALASRQVVASEQRMRSNDSSCEPVSSANEKQNKKFKLQKNSKSKTRKSIDEPVDSPNQSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGGERRGTQELNDQVGRLKDEVKSLYADERRLDELIRLVRF* 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16688957 16691906 + Chy3G063730.1 Chy03g01393 223554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01393 258 PANTHER TRANSCRIPTION FACTOR E2FC 7 254 - -
Chy03g01393 258 MobiDBLite consensus disorder prediction 98 156 - -
Chy03g01393 258 Pfam E2F/DP family winged-helix DNA-binding domain 156 219 IPR003316 GO:0005667|GO:0006355
Chy03g01393 258 SUPERFAMILY Winged helix DNA-binding domain 154 217 IPR036390 -
Chy03g01393 258 SMART E2F_TDP_2 154 219 IPR003316 GO:0005667|GO:0006355
Chy03g01393 258 PANTHER TRANSCRIPTION FACTOR E2F 7 254 IPR015633 GO:0000978|GO:0006357
Chy03g01393 258 Coils Coil 225 245 - -
Chy03g01393 258 MobiDBLite consensus disorder prediction 98 122 - -
Chy03g01393 258 Gene3D - 148 221 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01393 K06620 E2F3; transcription factor E2F3 - csv:101211469 462.996
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01393 Chy-Chr3:16688957 Chy05g00206 Chy-Chr5:1743675 1.83E-36 dispersed
Chy03g01393 Chy-Chr3:16688957 Chy02g02548 Chy-Chr2:28752355 1.16E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1096 . . . . . . . . Cmo05g00304 Cmo12g00363 . . . Car12g00390 Sed03g1691 . Cpe07g00370 Bhi04g00158 Tan02g2064 Cmetu03g0122 . Hepe10g0142 . Lcy13g1920 Cla08g01431 Cam08g1910 Cec08g1486 . Clacu08g1601 . Cre08g1386 . . . . . . . Cme03g01889 . . . . . . . . . . . Cma12g00412 Cma05g00301 Car05g00249 . Cpe11g00250 . . . . . . . . . . . . . . . Lsi08g01330 Csa02g02126 Chy03g01393 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy12g01298 CCT 3 352 E2F-DP Transcription Factor Family AT3G48160 52.6 7.7e-90 327.8
Chy07g00856 . 65 279 E2F-DP Transcription Factor Family AT5G02470 53.5 4.2e-61 231.9
Chy08g00971 . 11 460 E2F-DP Transcription Factor Family AT2G36010 53.5 1.0e-117 420.6
Chy05g00206 . 68 488 E2F-DP Transcription Factor Family AT2G36010 54.0 6.4e-115 411.4
Chy05g00206 . 67 481 E2F-DP Transcription Factor Family AT5G22220 56.5 1.9e-108 389.8
Chy03g01393 . 150 254 E2F-DP Transcription Factor Family AT1G47870 72.4 7.4e-37 151.8
Chy07g00856 . 65 279 E2F-DP Transcription Factor Family AT5G02470 53.5 4.2e-61 231.9
Chy05g00206 . 67 481 E2F-DP Transcription Factor Family AT5G22220 56.5 1.9e-108 389.8
Chy08g00971 . 11 460 E2F-DP Transcription Factor Family AT2G36010 53.5 1.0e-117 420.6
Chy05g00206 . 68 488 E2F-DP Transcription Factor Family AT2G36010 54.0 6.4e-115 411.4
Chy03g01393 . 150 254 E2F-DP Transcription Factor Family AT1G47870 72.4 7.4e-37 151.8
Chy12g01298 CCT 3 352 E2F-DP Transcription Factor Family AT3G48160 52.6 7.7e-90 327.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17731 PF02319 E2F_TDP 2.90E-25 CL0123 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01393 Chy_Chr03 FPKM 24.465654 24.810549 38.201542 38.876495 9.752528 12.940778 10.423197 76.239517 77.140923 75.483696