Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01393 ATGTCGAAGGCCGTCGAGGATCTCATCTTCCGCCACCGCCACTCTGATTTTCGATTTCATCTCCTTATCTCTCACTCTAACCATCGCGACATGTCGTCTTTTGCTTCTTCTTCCTCAGCTCTAGCTCTTCCGCCTCAGTGTTGTCTTCAGTACCATCGGCCTTCTTCACCGTCGGATCAGTCCAACGCTTGCGACGGCCGTCTATCTTCCGAGGCACATTCTACAGTTTCTACGATAGATTTGAAACGAGCATACGATATTAATAACTCCGAGGCTTTGGCTAGCAGACAAGTTGTAGCCTCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAGAAATTTAAGTTGCAGAAAAATTCGAAGTCTAAGACTCGAAAATCAATAGATGAGCCTGTCGATAGTCCTAATCAATCTACTAACGGTCGGTATGACAGCTCGTTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGAATTTATGATATTACAAATGTTCTTGAAGGAATAGGCCTCATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGAGGCGAGAGGCGTGGAACTCAAGAGCTCAACGATCAAGTTGGTAGATTAAAGGATGAAGTTAAAAGTTTATATGCAGATGAACGCAGACTTGATGAACTCATAAGGTTGGTTCGGTTTTAG 777 42.6 MSKAVEDLIFRHRHSDFRFHLLISHSNHRDMSSFASSSSALALPPQCCLQYHRPSSPSDQSNACDGRLSSEAHSTVSTIDLKRAYDINNSEALASRQVVASEQRMRSNDSSCEPVSSANEKQNKKFKLQKNSKSKTRKSIDEPVDSPNQSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGGERRGTQELNDQVGRLKDEVKSLYADERRLDELIRLVRF* 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16688957 16691906 + Chy3G063730.1 Chy03g01393 223554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01393 258 PANTHER TRANSCRIPTION FACTOR E2FC 7 254 - -
Chy03g01393 258 MobiDBLite consensus disorder prediction 98 156 - -
Chy03g01393 258 Pfam E2F/DP family winged-helix DNA-binding domain 156 219 IPR003316 GO:0005667|GO:0006355
Chy03g01393 258 SUPERFAMILY Winged helix DNA-binding domain 154 217 IPR036390 -
Chy03g01393 258 SMART E2F_TDP_2 154 219 IPR003316 GO:0005667|GO:0006355
Chy03g01393 258 PANTHER TRANSCRIPTION FACTOR E2F 7 254 IPR015633 GO:0000978|GO:0006357
Chy03g01393 258 Coils Coil 225 245 - -
Chy03g01393 258 MobiDBLite consensus disorder prediction 98 122 - -
Chy03g01393 258 Gene3D - 148 221 IPR036388 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01393 Chy-Chr3:16688957 Chy05g00206 Chy-Chr5:1743675 1.83E-36 dispersed
Chy03g01393 Chy-Chr3:16688957 Chy02g02548 Chy-Chr2:28752355 1.16E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17731 PF02319 E2F_TDP 2.90E-25 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01393 K06620 - csv:101211469 462.996