Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01396 ATGGAAACAGAGCGGCGAGATGGAAGCCAAGAGGCAGAGCTTACGGCGGCGGAGACGGCGGGGCAATCGAAGTTTCGTCGTATCTGCGTTTTCTGCGGCAGTAGCTCCGGCAAGAATCCCAGCTATCAAATTGCCGCCATTCAACTCGGAAATCAACTGGTCGAAAGGAACATTGACCTTGTTTACGGCGGAGGAAGCATTGGGCTTATGGGCTTAGTTTCTCAAGCCGTTTACGATGGCGGACGCCACGTGTTAGGAGTGATACCAAAATCTCTCATGCCAAAAGAGATTACTGGAGAGACAATTGGAGAAGTAAGAGCCGTATCAGGAATGCATCAACGCAAAGCTGAAATGGCTCGTCAAGCTGATGCATTTATTGCATTGCCTGGAGGCTACGGAACATTGGAAGAACTATTGGAAGTCATCACTTGGGCTCAATTGGGCATCCACGAAAAACCGGTGGGGTTGCTGAACGTGGATGGCTACTACAACTCACTATTATCATTCATAGACAAAGCAGTTGACGAAGGTTTCGTCTCACCAGCTGCCCGTAGCATCATCGTTTCTGCCCCAACTCCCCATGCCCTCATCACCAAGCTAGAGGAGTATGTCCCAAAGCATTCCAGCGTGGCATCGAAGCTGAGCTGGGAAATGGAACAGCAGCTTGGATTTACAGTAAAGTCAGACATTGCTCGCTGA 699 49.93 METERRDGSQEAELTAAETAGQSKFRRICVFCGSSSGKNPSYQIAAIQLGNQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKSLMPKEITGETIGEVRAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHEKPVGLLNVDGYYNSLLSFIDKAVDEGFVSPAARSIIVSAPTPHALITKLEEYVPKHSSVASKLSWEMEQQLGFTVKSDIAR* 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16713249 16715007 - Chy3G063760.1 Chy03g01396 223557

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01396 232 Pfam Possible lysine decarboxylase 70 199 IPR031100 -
Chy03g01396 232 PANTHER LOG FAMILY PROTEIN YJL055W 16 229 - -
Chy03g01396 232 SUPERFAMILY MCP/YpsA-like 25 203 - -
Chy03g01396 232 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 16 229 - -
Chy03g01396 232 TIGRFAM TIGR00730: TIGR00730 family protein 27 203 IPR005269 GO:0009691|GO:0016787
Chy03g01396 232 Gene3D - 14 202 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01396 K22522 LOG; cytokinin riboside 5'-monophosphate phosphoribohydrolase [EC:3.2.2.-] - csv:101211714 452.981
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy03g01396 Chy04g00426 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01396 Chy-Chr3:16713249 Chy04g02062 Chy-Chr4:26152586 2.44E-124 dispersed
Chy01g01078 Chy-Chr1:12194321 Chy03g01396 Chy-Chr3:16713249 4.16E-06 transposed
Chy04g01879 Chy-Chr4:24920805 Chy03g01396 Chy-Chr3:16713249 2.71E-122 transposed
Chy03g01396 Chy-Chr3:16713249 Chy04g00426 Chy-Chr4:3773545 4.68E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1089 Blo01g01592 . Bda01g00492 . Bpe02g00355 Bpe04g00242 Bma04g00242 Bma01g02363 Cmo05g00301 Cmo12g00365 Cma01g01966 . Car01g01536 Car12g00392 . . Cpe07g00372 Bhi04g00161 . . . Hepe10g0139 . . Cla08g01434 Cam08g1913 Cec08g1489 Cco08g1626 Clacu08g1604 . Cre08g1389 . . Cone17ag1395 . Lsi04g01732 Csa03g04269 Chy04g00426 Cme03g01892 . Blo18g00781 . Bda01g01529 Bpe02g01725 . Bma01g00729 . . Cmo01g02024 . Cma12g00414 Cma05g00298 Car05g00246 . Cpe11g00247 . Bhi09g02098 Tan01g5006 Cmetu04g2830 . Hepe01g1624 Mch11g0128 . Cla05g01879 Cam05g2011 Cec05g2022 Cco05g2080 Clacu05g2004 Cmu05g1885 Cre05g2006 Lsi08g01333 Csa02g02122 Chy03g01396 Cme04g00479
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000072 8 13 9 10 10 8 15 8 8 8 8 8 15 8 9 12 8 3 15 8 9 9 9 9 7 7 8 15 16 7 287
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01396 Chy_Chr03 FPKM 6.463505 8.366733 5.426176 5.017725 2.715433 3.273655 3.948882 4.496783 4.686363 4.261807