Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01399 ATGGAGGGGAGTAAGGGTTACGTGTGGGCAATTTCAGCCGGTCTCAACGCTGCGTTTGCCGCCATTGCAGCCAAGCTTTTCTCCTATACGTTAATTAGGTATGGTCTGGTAATTGCGTTCAACTTGGCAATGTGGGGATGTTATGTCAATAGCTTAAAAGCTCTCTCGTCATTACAAGCTACAGGGACAAACTTTTCAGCTAACTTTCTTTGTTCTGGTCTAGCCGGTTTCTTGTTGTTCGAAGAAGCATTATCATTTCGGCCGTTACAGTTTCAAGCATCTAACACATTCAAACCTACATCTCTTAACATCAATGCACTCTTTTCCAGTGGTGAAGTATCTACTGCTCCGAACTTTCGTGTTTTGGCTTATGTACATCTTGTTTCTGCTTATGATCACTTGCTTAGACTGTGGATAAATGGAGCTTTTTCATTACTGTATCTGTGTTGGTTGTTCGTTTTGGAGTCACAAATGGATGACAGTGGACACCGTGAGAATGGAAGGCACAAACCAGATCAGTATAAGTCAGCTCAGGGTCAGTGGATGATGCAGCATCAGCCCTCAATGAAGCAGATAATGGCAATTATGGCTGAAAGAGATGCAGCCATTCAAGAAAGAAATTTGGCCCTCTCGGAGAAAAAGGCTGCACTAGCAGAGCGAGACATGGCATATCTACAGCGAGACGCTGCAATTGCAGAGAGGAACAATGCCCTTTTGGAACGAGACAACGCCATTGCTACTCTTCAGTATCGTGAAAACTCCATAAATAACAATTTATCATGTCCACCAGGATGCCAAATTGCTAGGGGAGTGAAGCATATACATCATCCACAGCAGCAACACACACATCATGTGCCCCACATGAATGAGAATAATTACAATTCAAGAGAAATGCTTGCTTCCAACGACCCTTGCCCAACATCCCCTGTCGCTTCTGAATCAACAAAGGCACGACGAAACAAGCGTCCAAAAGAGGGAAAGACAGTCACAACACCAAACAAGAAAGTTTCAAAAGGTCCACGGAAGGTCAAAAGGGAGGCTGAAGACTTGAACAAAATAATGTTGGGGAAGTCACAAGAATGGAAGGATGGAATTGGTATAATGAGTGGAGGTGACGATCTTAATAAACAGTTGGTAGTATCAAAATCAGATTGGAAAGGGCAGGATTTAGGATTAAACCAGGTTGCATTTGACGAATCAACCATGCCAGCTCCAATATGCTCCTGCACAGGAGTAATAAGACAATGCTACAAATGGGGAAATGGTGGATGGCAATCTGCATGTTGTACTACCACCCTCTCAATGTATCCATTACCTGCCGTTCCCAACAAACGACACGCTCGGCTCGGCGGTCGGAAAATGAGTGGAAGTGCTTTTAACAAACTGCTTAGCCGCCTTGCAGCCGAAGGCCACGACCTATCCGCTCCAGTTGATCTTAAAAATCACTGGGCAAAGCATGGAACAAATCGTTACATCACCATCAAGTAG 1488 44.35 MEGSKGYVWAISAGLNAAFAAIAAKLFSYTLIRYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFLLFEEALSFRPLQFQASNTFKPTSLNINALFSSGEVSTAPNFRVLAYVHLVSAYDHLLRLWINGAFSLLYLCWLFVLESQMDDSGHRENGRHKPDQYKSAQGQWMMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAYLQRDAAIAERNNALLERDNAIATLQYRENSINNNLSCPPGCQIARGVKHIHHPQQQHTHHVPHMNENNYNSREMLASNDPCPTSPVASESTKARRNKRPKEGKTVTTPNKKVSKGPRKVKREAEDLNKIMLGKSQEWKDGIGIMSGGDDLNKQLVVSKSDWKGQDLGLNQVAFDESTMPAPICSCTGVIRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARLGGRKMSGSAFNKLLSRLAAEGHDLSAPVDLKNHWAKHGTNRYITIK* 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16759840 16769247 - Chy3G063790.1 Chy03g01399 223560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01399 495 SMART GAGA_bind_2 158 495 IPR010409 -
Chy03g01399 495 MobiDBLite consensus disorder prediction 296 314 - -
Chy03g01399 495 Pfam GAGA binding protein-like family 158 495 IPR010409 -
Chy03g01399 495 Coils Coil 215 242 - -
Chy03g01399 495 MobiDBLite consensus disorder prediction 315 331 - -
Chy03g01399 495 PANTHER PROTEIN BASIC PENTACYSTEINE6 158 495 - -
Chy03g01399 495 PANTHER - 158 495 IPR010409 -
Chy03g01399 495 MobiDBLite consensus disorder prediction 296 344 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01399 - - - csv:101207697 679.093
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00732 Chy-Chr1:5369410 Chy03g01399 Chy-Chr3:16759840 1.27E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1061 . . . . . . . . . . . . . . . . . Bhi04g00240 . . . Hepe10g0135 . . Cla08g01437 Cam08g1917 Cec08g1493 . . . Cre08g1393 Cone4ag1956 Cone7ag1869 . . . . . Cme03g01896 . Blo18g00782 . . . . Bma01g00731 . . . . Cma12g00420 . . Car15g00648 . . . . . . . . . . . . . . . . Lsi08g01338 . Chy03g01399 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy03g01399 . 381 496 BBR/BPC Transcription factor family AT2G35550 59.5 1.7e-38 156.4
Chy01g00732 . 207 314 BBR/BPC Transcription factor family AT2G35550 59.3 4.2e-37 151.8
Chy03g01399 . 389 496 BBR/BPC Transcription factor family AT1G68120 57.4 3.9e-37 152.1
Chy01g00732 . 1 314 BBR/BPC Transcription factor family AT2G21240 62.7 3.3e-82 302.0
Chy03g01399 . 158 496 BBR/BPC Transcription factor family AT2G21240 51.6 2.2e-62 236.1
Chy01g00732 . 1 314 BBR/BPC Transcription factor family AT4G38910 59.6 1.8e-69 259.6
Chy03g01399 . 158 496 BBR/BPC Transcription factor family AT4G38910 50.1 3.2e-58 222.2
Chy03g01399 . 245 496 BBR/BPC Transcription factor family AT5G42520 61.7 1.6e-81 299.7
Chy03g01399 . 381 496 BBR/BPC Transcription factor family AT2G35550 59.5 1.7e-38 156.4
Chy01g00732 . 207 314 BBR/BPC Transcription factor family AT2G35550 59.3 4.2e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004398 3 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17733 PF06217 GAGA_bind 2.40E-106 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01399 Chy_Chr03 FPKM 7.776817 9.718361 0.079755 0.0 0.0 0.0 0.0 0.363448 0.0 0.0