Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01402 ATGGATGGAGACCATAAAAAGTCTGGTTTTAGGAAAAGAACGAAGCCAAAGGATGGTGGGTTTGACTCAGATGTCGATGAGCCCATTGGTTCTCTACTTAAGTTGAAGAGATCACGAAACTCTAAAAAAACTAAGTTGAATGTAGATGATGGAGGTGGAAGGGACAAGATGGTTGACAAGAAAGGAGCAAAGTTGCCATTGCAAGAGGACTTTGGTGGAATGGATGATACTTTAGCTAGTTTTAGAAAGAAGTTGAAGCGTCCTAAAAAGGTTAATGGAACTGGAATTGCTAGGGAACAGAGTTCTGCTCTAAGCGTGACAGAATCTTTGAATCCATTATCTAATACATCCAAAGGACATGGGGACTTAGACACAAGATTGAGACCAGAAAATGGTGAATTAATGGATCGTGAGGATTCTGATTCATCTGCAAAGATTGATGCAGAAATGAGGTGTGAAGCACCTGATCTGGAATCAAAAGACATGGTGATGGGCATCTCTAGTAGGAGAAGTGCTAATTGCTCTTTGGATAAACAGCTGGATGATTCATTGTCAGCATTTGTCCAAAAGGTTCAGTCTGGTTCAACTAGGAAATCAGTGGTATCTACAACATTTAGACCAGACTGCAAGGATGAGGCTTCTGAAGATAAATTGAGTCCTTTTTGTAGAGCTGTTTCTGAGGATCATGAAGCACACTCCATTGTGAGTATTAATTCTTCATCTAAGCTGGCACAAGTTGTCAAAAAACCAGATTGTGAACTTACTACATCATATTTAATTTCCTGTTCGCATTGCACCAAAGAGAACTGTAATCCTGGTCGGGGACAATGTCATCTAGGGATTAAACATGACCAAGAAGAGGATCCATGCTCTCTCAATGGTCACGAGAATCCTGACATGAGACCACGCATATCAAATGAAGTTGCTGATAAAGACAGCAAAAACGTTAGTCAATTTAGGGACAATTTCCGGGTGCTGGAAAGAAAAGCATCGTGTGAAATCAAGAATGTACTAAAACATTGTTCTTGTGGCAATACAATCACGAATAGCCATTTGGCAGCAATAGGTTCTTTTCAGGATGGGCTAGGTGAGAATCAAATTAATGAAAACATGTGCAGTTCTTGTCGTCCTCTAGAAAAGATAAATGAAAACCATGACCTTTGTGTGGGTGTTTCCAGCAGAGATTTCTGTGATGCGGTGGCCCAAGAGACCACAGTCAATTTGTCTAAAACAATTCCAGGTGTAGATTGTGAAGGGAAAGAAAGATTACTTGTTAAATATCATGATGAATTGTCAAAATCTACCAATTTCTGTGAAAGTTCTTCCAATCCTCAGTTATCTGCAGGCTTTGATTCAACGAAAGTGGATAAAACTGACAGTGACTCTGATAATTTAAATACTGGAAATGATGAGCCGAATGACAAAGGTTGTTCTATGCAGAAGGAAAATGCTACGATCTCTAATAGGATAGATTCAACTGCTGTTCAATCTCTCAGATTGCAAAAACCTGGGGCAAAGTATCCAGATTTTTGTCCTGGTGGAAATTTCAGCATGATATCAGATAGTCAACCGGCCAAGGCTCCGCTGGAGATGGATGGTCCAAATAACATACTTACTGGTAAAGAGGTTAAGGTATCTTCTCTTGGGTCTTTCACTCCAGATGATAATGACCTTGAGGATGTAATATCTGCTCCTGGTAGTGAAAAAGATTTAAAGCTTTCAGCTTTACAGCGTGTAGTGCGCAAGACCAAGAAGCCCAGGCATGAGGACATGGCTTATGAAGGAGATATTGATTGGGAGGTTTTGATTAGTGAGCGTGCAGTTGATGGCGATCATTCTTTCAGATCAAGAAAGGATTCTACATCAACAACCTTTACAGAGGCTGAAACTGGTGGTAGGGCTGCGGTGTCTGCAGGGCTTAAGGCACATGCAGTTGGTCTACTTGAGAAGATTAAATTTAAGGATGTGCTAAAGCGCAAAGGTGGGCTTCAAGAGTACATAGCATGCAGGAACCAGATCCTGGGACTTTGGTGTAAAGATGTTACACGCATTTTGCGTCTTGTTGACTGTGGGGTCACTGATACTCCCTCTATGGATGAACCACCACGTTTCTCCCTTGTTAGGGAGATCTATGCATTTCTTAATCTACGTGGTTATATAAATGCGGGGATTGCCTCTGAGAAAGCCAAATCAGAATCTGACATTAAATATGATTATGAACTGGGAGAGAAAAAAGTTGGAGATGTTAGTGTTGCTTCACCTGCTGATTCCGAGGAAGGGGTTTCTGTCATGGTAAAAACTTCCGATGCTTCTAATGCAGAGAATGATGTTTCAGCTGGCTGTGAAGTAATATTGAAGGATGCTGAAGGAAGAGGCCCTGTGATTGAAAATAATTTGGATTTACCCAAACCAGCGGAACTCGAACAAGAATTGGTACATGAATTGGAGTACTGTACTCCTGATCCTATACAGGTAAAATTTGTTGGTGACGTTCCAGGTAAAGCTGCCTCACATTTTACTAATCAGTCAAGAGACGGTTGGGGCCCAATCTCCTCTAATGAGTGTGTAGGAGATGATCAACAACAGCAGAGTAATTCTGAAGTAAAAAAGAAAGTAATTGTGATTGGAGCTGGTCCTGCTGGCTTAACTGCTGCAAAGCACTTGCTTCGACAGGGCTTTACTGTCACTGTACTGGAAGCTAGGAATAGGTTAGGAGGCCGTGTTCATACAGATCGCTCCTCTCTTTCTGTTCCTGTAGATCTTGGTGCAAGTATTATTACAGGAGTAGAGGCTGATGTCGCAACTGAAAGAAGACCCGATCCTTCCTCATTGATATGCACTCAATTGGGCCTCGAGTTGACTGTATTAAATAGTGACTGTCCCCTCTATGACATCATTACTTGCAAAAAAGTTCCACTAGACATGGATGAAGCTTTGGAAGCAGAATATAATAGTCTTCTTGATGACATGGTGTTGCTTGTTGCGCAAAGAGGGGAGCATGCAATGGCTATGTCCCTTGAGGAAGGTTTAGAATATGCCCTTAAGCGACGACGCATGGCTCGAGGAATGGATGTTTGTTCTGAGGAAGAGGTTTTGAGTCCCTTTGAGAGGAGAGTTATGAATTGGCATTTTGCTAACTTGGAGTATGGTTGTGCTGCTATGCTCAAGAAAGTATCTCTTCCTAACTGGAACCAGGATGATCTTTATGGAGGTTTTGGAGGAGCTCATTGTATGATTAAAGGGGGTTATAGCACTGTTGTTGAGTCTCTTGGTGGAGGACTTGATGTTCGCCTAAACCATGTTGTGGCTGATATTTCTTACAGCACCAGTGACGTTGGGTTTAATGGGAATCAATGTGCAAAGGTGAAAGTTTCCACAACCAATGGTTGCGAGTTTCTGGGAGATGCTGTCCTTATTACTGTGCCTCTTGGATGCTTGAAAGCAGAAACTATCAAGTTTTCACCACCATTGCCTGAATGGAAGCGTCTGTCCATCCAGCGCCTTGGGTTTGGGGTTCTTAACAAAATAGTTATTGAATTTCCTGAAGTTTTCTGGGATGACTCTGTGGATTATTTTGGGGCAACGGCAGAGGAAACAAAATGGAGGGGGCAATGTTTCATGTTTTGGAATGTAAGAAAAACAGTTGGTGCGCCAGTTCTCATAGCATTAGTGGTTGGTCAGGCTGCTGTGGAGAGGCAATATATGAGCTCTTCCGAAAATGTAAGCCATGCATTAATGGTCCTTCGCAAACTTTTTGGAGAAGCAGTAGTACCTGATCCAGTTGCATCAGTTGTAACTGATTGGGGAAGAGATCCATTTAGCTATGGTGCTTACTCATATGTTGCTGTTGGAGCGTCTGGAGAGGACTATGATATTTTAGCAAAACCTGTTGGAAAGTGTTTGTTCTTTGCTGGTGAAGCTACTTGCAAGGAGCATCCTGACACTGTTGGGGGTGCAATGATGAGTGGGCTAAGAGAGGCTGTGCGCATGATTGATATATTGAGTGATGGTTATGATTTCACAGCAGAAGTAGAGGCAATGGAGGCTGCTCAGAGGCAGTCTGAGTGTGAGAATGATGAAGTTGGGGACATAATTACAAGACTCGAGGCTGTTAAGCTTTCTGACGCTCTTTACAAAAGTTCTTCGGATGGTGCCAGGATTTTGACCACAGAAGCTTTACTGCAAGATTTGTTCTTTAGTTCAAAAACGACAGCAGGGAGATTGCATGTGGCAAAGGAGTTGTTGAATCTCCCTGCTGAGACGTTGAAGTCCTTTGCAGGGACTAAAGAAGGTCTTACAGTTCTCAACTCATGGATTTTGGACTCAATGGGGAAGGATGGGACTCAACTTCTTCGGCAATGTGTGCGTATTCTTGTGGTAGTTTCAACAGATCTACTTGCAGTTCGCTTATCGGGCATAGGTAAAACCGTCAAAGAAAAGGTATGTGTGCATACAAGCCGTGACATCCGTGCCATTGCAAGTCAGTTGGTTAGCATTTGGCTTGAAGTCTTCCGTAAAGAAAAGGCTGCTAATGGGGGGCTAAAACTCTCTAAGTCGGTTTCTGCTGTAGAATTATTGAAGAGGAAATCTAATAAAGACTCTTCTTCTGGGAAACCTCCTTTGCACGCAAACAACAGCACACTGGATAGTAGAGGGAATTTGTTGACTTCTGCATCAGCGACAATGCCCTTGCAGTCTGATGTCAATATGAAAAACGAAAATAGCAAACAATTGAAATTTGAATTGGAAAACTCATCGAAATCAGATATCAGTTCATCAAGGTCAAGGGGTTCATTTGGAAAGCAGGATGCGGAGATGGAAGACAACATTGCTATGACAGAAGAAGAGGAGGCTGCCTTTGCTGCTGCTGAGGCAGCACGTGCAGCTGCACTTGCAGCTGCGAAGGCCTATGCATCTGCTGAAGCCAAGAGTGCGATGCAACTCCCAAAAATCCCCTCCTTTCACAAATTTGCTCGACGGGAGCATTATGCTCAAATGGATGAGTGTGAGTATAAAAAGAAGTTGTCTGGCAGTGTGCTGGGAAGGCAAGATTGTATATCCGAAATAGATTCAAGAAATTGCAGGGTCAGAAACTGGTCTGTGGAATTTTCTGCTGCTTGTGTTAATCTTGAAAGTTCACGAATGTCGGCTGATAACCTTTCGCAAAGAAGCCATTCAAATGAGATTGTTAGCCAATTAAACTTTAGGGAGCACTCTGGTGAAAGTGCTCCTGTGGATAGCAGTATATACACAAAAGCATGGGTTGATACAGCTGGTAGTGTTGGAATGAAAGATTATCATGCTATTGAGAGATGGCGCACGCAAGCAGCTGCAGCTCATGTAAATGATGAGGAGGATTCAAACACGAATTGGCATAAACCCACGTGGAATAATGATCAAGTAGCAAATGAGAGCTCAATATCACAAGTGACGATCAACAAGGAGCCCATGAGAAACCATCATCGTGGGGCTGACAGAATTAAGCAGGCTGTAGTTGATTATGTTGCATCACTCTTGATGCCCCTTTACAAAGCAAGGAAAATTGACAAGGATGGATACAAGTCAATTATGAAGAAAAGTGCAACCAAGGTCATGGAACAGGCGACTGATGCGGAGAAAGGCATGACTGTTTCTGAGTTTCTTGATTTCAAGCGTAGGAACAAGACTACTATGGTTAGTGCTCTGTTGCCTACAACTTTGATCAGCGCAAATGTTCCTGACGTATAG 5727 42.59 MDGDHKKSGFRKRTKPKDGGFDSDVDEPIGSLLKLKRSRNSKKTKLNVDDGGGRDKMVDKKGAKLPLQEDFGGMDDTLASFRKKLKRPKKVNGTGIAREQSSALSVTESLNPLSNTSKGHGDLDTRLRPENGELMDREDSDSSAKIDAEMRCEAPDLESKDMVMGISSRRSANCSLDKQLDDSLSAFVQKVQSGSTRKSVVSTTFRPDCKDEASEDKLSPFCRAVSEDHEAHSIVSINSSSKLAQVVKKPDCELTTSYLISCSHCTKENCNPGRGQCHLGIKHDQEEDPCSLNGHENPDMRPRISNEVADKDSKNVSQFRDNFRVLERKASCEIKNVLKHCSCGNTITNSHLAAIGSFQDGLGENQINENMCSSCRPLEKINENHDLCVGVSSRDFCDAVAQETTVNLSKTIPGVDCEGKERLLVKYHDELSKSTNFCESSSNPQLSAGFDSTKVDKTDSDSDNLNTGNDEPNDKGCSMQKENATISNRIDSTAVQSLRLQKPGAKYPDFCPGGNFSMISDSQPAKAPLEMDGPNNILTGKEVKVSSLGSFTPDDNDLEDVISAPGSEKDLKLSALQRVVRKTKKPRHEDMAYEGDIDWEVLISERAVDGDHSFRSRKDSTSTTFTEAETGGRAAVSAGLKAHAVGLLEKIKFKDVLKRKGGLQEYIACRNQILGLWCKDVTRILRLVDCGVTDTPSMDEPPRFSLVREIYAFLNLRGYINAGIASEKAKSESDIKYDYELGEKKVGDVSVASPADSEEGVSVMVKTSDASNAENDVSAGCEVILKDAEGRGPVIENNLDLPKPAELEQELVHELEYCTPDPIQVKFVGDVPGKAASHFTNQSRDGWGPISSNECVGDDQQQQSNSEVKKKVIVIGAGPAGLTAAKHLLRQGFTVTVLEARNRLGGRVHTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICTQLGLELTVLNSDCPLYDIITCKKVPLDMDEALEAEYNSLLDDMVLLVAQRGEHAMAMSLEEGLEYALKRRRMARGMDVCSEEEVLSPFERRVMNWHFANLEYGCAAMLKKVSLPNWNQDDLYGGFGGAHCMIKGGYSTVVESLGGGLDVRLNHVVADISYSTSDVGFNGNQCAKVKVSTTNGCEFLGDAVLITVPLGCLKAETIKFSPPLPEWKRLSIQRLGFGVLNKIVIEFPEVFWDDSVDYFGATAEETKWRGQCFMFWNVRKTVGAPVLIALVVGQAAVERQYMSSSENVSHALMVLRKLFGEAVVPDPVASVVTDWGRDPFSYGAYSYVAVGASGEDYDILAKPVGKCLFFAGEATCKEHPDTVGGAMMSGLREAVRMIDILSDGYDFTAEVEAMEAAQRQSECENDEVGDIITRLEAVKLSDALYKSSSDGARILTTEALLQDLFFSSKTTAGRLHVAKELLNLPAETLKSFAGTKEGLTVLNSWILDSMGKDGTQLLRQCVRILVVVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSIWLEVFRKEKAANGGLKLSKSVSAVELLKRKSNKDSSSGKPPLHANNSTLDSRGNLLTSASATMPLQSDVNMKNENSKQLKFELENSSKSDISSSRSRGSFGKQDAEMEDNIAMTEEEEAAFAAAEAARAAALAAAKAYASAEAKSAMQLPKIPSFHKFARREHYAQMDECEYKKKLSGSVLGRQDCISEIDSRNCRVRNWSVEFSAACVNLESSRMSADNLSQRSHSNEIVSQLNFREHSGESAPVDSSIYTKAWVDTAGSVGMKDYHAIERWRTQAAAAHVNDEEDSNTNWHKPTWNNDQVANESSISQVTINKEPMRNHHRGADRIKQAVVDYVASLLMPLYKARKIDKDGYKSIMKKSATKVMEQATDAEKGMTVSEFLDFKRRNKTTMVSALLPTTLISANVPDV* 1909
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16781176 16790132 + Chy3G063820.1 Chy03g01402 223563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01402 1908 MobiDBLite consensus disorder prediction 842 864 - -
Chy03g01402 1908 MobiDBLite consensus disorder prediction 95 120 - -
Chy03g01402 1908 SUPERFAMILY FAD-linked reductases, C-terminal domain 1169 1280 - -
Chy03g01402 1908 Gene3D - 631 734 IPR036388 -
Chy03g01402 1908 SUPERFAMILY Homeodomain-like 633 727 IPR009057 -
Chy03g01402 1908 MobiDBLite consensus disorder prediction 1 33 - -
Chy03g01402 1908 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 571 1889 - -
Chy03g01402 1908 PANTHER FLAVIN MONOAMINE OXIDASE 571 1889 - -
Chy03g01402 1908 MobiDBLite consensus disorder prediction 1536 1550 - -
Chy03g01402 1908 MobiDBLite consensus disorder prediction 1528 1550 - -
Chy03g01402 1908 MobiDBLite consensus disorder prediction 1582 1603 - -
Chy03g01402 1908 Gene3D - 959 1286 - -
Chy03g01402 1908 Pfam SWIRM domain 643 721 IPR007526 GO:0005515
Chy03g01402 1908 MobiDBLite consensus disorder prediction 42 66 - -
Chy03g01402 1908 Gene3D - 872 1329 IPR036188 -
Chy03g01402 1908 PRINTS Adrenodoxin reductase family signature 871 893 - -
Chy03g01402 1908 PRINTS Adrenodoxin reductase family signature 894 907 - -
Chy03g01402 1908 MobiDBLite consensus disorder prediction 87 144 - -
Chy03g01402 1908 Pfam Flavin containing amine oxidoreductase 880 1331 IPR002937 GO:0016491
Chy03g01402 1908 SUPERFAMILY FAD/NAD(P)-binding domain 869 1333 IPR036188 -
Chy03g01402 1908 MobiDBLite consensus disorder prediction 465 479 - -
Chy03g01402 1908 MobiDBLite consensus disorder prediction 1 73 - -
Chy03g01402 1908 MobiDBLite consensus disorder prediction 448 479 - -
Chy03g01402 1908 ProSiteProfiles SWIRM domain profile. 631 731 IPR007526 GO:0005515
Chy03g01402 1908 MobiDBLite consensus disorder prediction 1584 1599 - -
Chy03g01402 1908 MobiDBLite consensus disorder prediction 121 144 - -
Chy03g01402 1908 MobiDBLite consensus disorder prediction 290 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01402 - - - csv:101212190 3595.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01402 Chy-Chr3:16781176 Chy04g00592 Chy-Chr4:6510016 5.72E-89 dispersed
Chy03g01402 Chy-Chr3:16781176 Chy07g01063 Chy-Chr7:15595009 1.02E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1052 Blo01g01586 . . . Bpe02g00363 . Bma04g00234 . Cmo05g00295 Cmo12g00373 . . . Car12g00399 . . Cpe07g00378 Bhi04g00235 . . . Hepe10g0131 . . . . . . . . . Cone4ag1951 Cone7ag1863 . . . . . . . . . . . . . . . . . Cma12g00423 Cma05g00288 Car05g00239 . Cpe11g00239 . . . . . . . . . . . . . . . Lsi08g01341 Csa02g02114 Chy03g01402 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004381 1 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17734 PF01593 Amino_oxidase 1.80E-100 CL0063 Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy03g01402 Chy_Chr03 FPKM 0.0 0.0 0.0 1.217306 0.0 0.37709 0.0 1.140317 0.33073 0.34845