Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01403 ATGTCGTCAGCCTTCAGCGGCGATGAAACAGCACCCTTCTTCGGCTTCCTCGGCGCCGCTGCAGCTCTCGTCTTCTCCTGTAATTTATCTTTTCATCCAATGCGTATGGGAGCTGCTTATGGAACGGCGAAGAGCGGGGTGGGGGTTGCGTCTATGGGAGTAATGAGGCCTGAACTGGTGATGAAGTCAATTGTTCCAGTGGTTATGGCTGGAGTTTTGGGTATTTATGGTCTTATTATTGCTGTCATTATTAGTACAGGGATTAACCCTAAGGCCAAATCTTATTACCTCTTCGATGGTTACGCACATCTCTCCTCTGGGCTTGCTTGTGGTCTTGCTGGTCTGTCCGCTGGCATGGCTATTGGGATCGTCGGTGATGCTGGTGTTAGGTACCATTTATTAACGTTTTGGGAACTTTTCTTTTGTCGTCTGTTCGTGCTTGTATACTCATGA 453 48.12 MSSAFSGDETAPFFGFLGAAAALVFSCNLSFHPMRMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYHLLTFWELFFCRLFVLVYS* 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16792499 16793054 + Chy3G063830.1 Chy03g01403 223564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01403 150 Pfam ATP synthase subunit C 17 84 IPR002379 GO:0015078|GO:0033177|GO:1902600
Chy03g01403 150 PRINTS Vacuolar ATP synthase 16kDa subunit signature 64 88 IPR000245 GO:0033179|GO:0046961|GO:1902600
Chy03g01403 150 PRINTS Vacuolar ATP synthase 16kDa subunit signature 115 141 IPR000245 GO:0033179|GO:0046961|GO:1902600
Chy03g01403 150 PRINTS Vacuolar ATP synthase 16kDa subunit signature 38 62 IPR000245 GO:0033179|GO:0046961|GO:1902600
Chy03g01403 150 SUPERFAMILY F1F0 ATP synthase subunit C 95 131 IPR035921 -
Chy03g01403 150 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 145 - -
Chy03g01403 150 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 88 - -
Chy03g01403 150 Gene3D - 11 145 IPR035921 -
Chy03g01403 150 PANTHER V-TYPE PROTON ATPASE SUBUNIT C3 3 145 - -
Chy03g01403 150 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 129 IPR011555 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01403 Chy-Chr3:16792499 Chy06g00369 Chy-Chr6:2473337 2.21E-78 dispersed
Chy03g01403 Chy-Chr3:16792499 Chy03g01404 Chy-Chr3:16796299 1.37E-76 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01403 K02155 - csin:114292490 210.69