Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01404 ATGTCGTCCTCGTTCAGCGGTGATGAAACGGCACCCTTCTTTGGCTTCCTCGGCGCTGCTGCGGCCCTTGTTTTCTCCTGTATGGGAGCTGCTTACGGGACGGCAAAGAGCGGTGTTGGTGTGGCGTCAATGGGAGTGATGAGGCCAGAATTGGTAATGAAGTCTATTGTTCCGGTGGTTATGGCTGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACGGGGATTAACCCTAAGGCTAAATCTTATTATCTTTTCGATGGTTACGCTCATCTTTCCTCTGGTCTTGCTTGCGGCCTCGCCGGTCTCTCTGCTGGCATGGCTATCGGAATCGTCGGCGATGCGGGCGTCAGTTTAATAATTAAAATGTGGAATTACCATCTAAAAGGTCGGAAAACAATTGTTAAAAAATATGACAAACTATTAATTTAA 444 45.95 MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVSLIIKMWNYHLKGRKTIVKKYDKLLI* 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16796299 16799336 + Chy3G063840.1 Chy03g01404 223565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01404 147 SUPERFAMILY F1F0 ATP synthase subunit C 87 124 IPR035921 -
Chy03g01404 147 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Chy03g01404 147 Gene3D - 11 130 IPR035921 -
Chy03g01404 147 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Chy03g01404 147 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Chy03g01404 147 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Chy03g01404 147 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 122 - -
Chy03g01404 147 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Chy03g01404 147 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
Chy03g01404 147 Pfam ATP synthase subunit C 97 126 IPR002379 GO:0015078|GO:0033177|GO:1902600
Chy03g01404 147 PANTHER V-TYPE PROTON ATPASE SUBUNIT C3 3 122 - -
Chy03g01404 147 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01156 Chy-Chr3:14787207 Chy03g01404 Chy-Chr3:16796299 1.68E-09 dispersed
Chy03g01404 Chy-Chr3:16796299 Chy06g00369 Chy-Chr6:2473337 3.54E-81 dispersed
Chy03g01403 Chy-Chr3:16792499 Chy03g01404 Chy-Chr3:16796299 1.37E-76 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01404 K02155 - pvy:116116157 214.927