Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy03g01412 ATGATCAACGACCCTTCCGATGAGCCTTCTAGATCAGCTTTTACCCTCATGCGCCCAGCTGCTGCTGCTTTTGCCGCTGCAGCCGCTTCTGCCGCTACTGCTGGCGGCATGAATTGTCAAGATTGCGGCAACCAAGCTAAGAAGGATTGTGCTTATTTGCGGTGTAGAACTTGCTGCAAGAGCCGAGGGTTTCAGTGTCAGACTCACGTGAAAAGCACGTGGGTTCCCGCTGCTAAACGCCGTGAGAGACAACAGCAAATTGCTGCTTTACAACACCAGCAACAGCAAGAGCAGTTCCGTGGCGGTGACAATTCTAAAAGACTAAGAGAAACTCAAACCGCCACCGCTGTCGCTGCCGCTCCCACCGCCTCCGCCTCCGCTTGCCCTCGTCTGCCCTCCATCACGTCAGGGTTAGAACTGGCGCAATTTCCATCAGAAGTGAACTCACCGGCGGTATTTCGGTGCGTAAAAGTAAGTGCAATGGACGATGCAGATGAAGAGTTTGCATATCAGACGGCTGTTAATATAGGTGGCCACGTGTTCAAAGGAATTCTTTACGATCAAGGTCCTGAACTTCGTTACACCGCAGCTGGTGAAAGCTCTTCCGGCCACGGCGGAGACGGATCAACACACCCACTTAACCTAATTGCCGGTCCCACTTCCACCACTACCTCCGCCGCAACTAGTACCAACCCCGCTGCCGCCTCCGCCTCCACCGCGCCGTTGCTTGATCCTTCTATATATCCAGCTCCTCTCAATGCATTTATGGCTGGTACGCAGTTCTTCCCACCCTCAAGGTCATGA 804 53.61 MINDPSDEPSRSAFTLMRPAAAAFAAAAASAATAGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQHQQQQEQFRGGDNSKRLRETQTATAVAAAPTASASACPRLPSITSGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPELRYTAAGESSSGHGGDGSTHPLNLIAGPTSTTTSAATSTNPAAASASTAPLLDPSIYPAPLNAFMAGTQFFPPSRS* 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16854987 16856126 + Chy3G063920.1 Chy03g01412 223573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy03g01412 267 MobiDBLite consensus disorder prediction 202 237 - -
Chy03g01412 267 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 38 80 IPR006510 -
Chy03g01412 267 PANTHER PROTEIN SHI RELATED SEQUENCE 7 8 264 - -
Chy03g01412 267 MobiDBLite consensus disorder prediction 196 238 - -
Chy03g01412 267 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 8 264 IPR007818 GO:0003700|GO:0006355
Chy03g01412 267 Pfam Domain of unknown function (DUF702) 36 191 - -
Chy03g01412 267 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 142 190 IPR006511 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy03g01412 Chy04g00453 CCT
Chy03g01412 Chy04g00453 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01412 Chy-Chr3:16854987 Chy07g01266 Chy-Chr7:17371774 4.64E-58 dispersed
Chy02g00602 Chy-Chr2:3653304 Chy03g01412 Chy-Chr3:16854987 1.63E-67 wgd
Chy03g01412 Chy-Chr3:16854987 Chy04g00453 Chy-Chr4:4099929 8.04E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17736 PF05142 DUF702 8.70E-68 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy03g01412 - - cmo:103488016 440.654