Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy03g01417 | ATGGCGGACTCGGGCTCTGCCTCTGACAAGAGAATGTCGTGCTCTATCCCTGAGAGGTTCCAACTCCATGCCGCCATGTTGGCCTTGCAATTCGGCTATGCCGGTTTCCATGTCGTCTCTAGAGCTGCCCTCAACATGGGCATTAGTAAACTCGTCTTCCCTGTTTACCGAAATGTCATCGCTTTGCTCCTCCTCCTTCCCTTTGCATATTTCATCGAAAAGAAGGATAGACCTGCTCTCACTCTCAACTTTGTCCTTCAGTTCTTCCTGCTGGCTCTCGTTGGAATTACAGCCAATCAAGGGTTTTACTTGCTGGGTTTGGATAATACTTCCCCAACCTTTGCTTCTTGTATTCAAAATTCTGTCCCTGCCATTACTTTCCTCATGGCTGCACTTCTCAGAATTGAGCAAGTACGACTGAACCGGAAAGATGGGATAGCAAAGGTGATGGGTACAATATGTTGCGTGGCCGGAGCGACGGTGATCACATTATACAAAGGGCCCACCATCTACAGCCCCTCAACAACAACGGTGACGTTGCAGGGTATGGCAGAGACGACAGCGGCAATGACCCTGCAAGGGCCGGGAATGTTCCCGTCGCTAGGCGACGCAAAGGGGAAAAGCTGGACGTTAGGGTGCGTGTACTTGATCGGCCACTGCTTGTCGTGGTCGGCGTGGCTAGTCCTTCAAGCACCGGTGCTGAAAAAGTATCCGGCTCGCCTCTCCGTCACCTCCTTCACTTGCTTCTTTGGCCTCATCCAATTCCTCATCATCGCCGTCGCCTTCGAGCGCGACGCTCAGGCTTGGCTCTTTCACTCCAGCGCTGAAGCCTTTAGCATTGTTTATGCTGGGGTGGTGGCTTCGGGGATAGCATTTGCTGTACAGATATGGTGCATTGACAGAGGTGGCCCTGTCTTCGTTGCTGTCTACCAACCTGTTCAGACCTTCGTCGTTGCTCTCATGGCTTCCTTCGCTTTGGGCGAGGAGTTCTACTTGGGAGGGATCATAGGGGCGGTGCTTATTATAACGGGATTGTACCTTGTGCTGTGGGGAAAGAGCGAAGAAAAGAAAATCTTATTGGAAAGATCAATGATCCAGAGCGCACCGGACCATGGTAGCAGCAGAATAAGTGGCCAGATCAAACCGTCCATTACCCAGCCACTACTCCATCCTACGGCTGAAAATGTTTGA | 1191 | 51.55 | MADSGSASDKRMSCSIPERFQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNVIALLLLLPFAYFIEKKDRPALTLNFVLQFFLLALVGITANQGFYLLGLDNTSPTFASCIQNSVPAITFLMAALLRIEQVRLNRKDGIAKVMGTICCVAGATVITLYKGPTIYSPSTTTVTLQGMAETTAAMTLQGPGMFPSLGDAKGKSWTLGCVYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSFTCFFGLIQFLIIAVAFERDAQAWLFHSSAEAFSIVYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVALMASFALGEEFYLGGIIGAVLIITGLYLVLWGKSEEKKILLERSMIQSAPDHGSSRISGQIKPSITQPLLHPTAENV* | 397 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 16911876 | 16915627 | + | Chy3G063970.1 | Chy03g01417 | 223578 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy03g01417 | 396 | PANTHER | WAT1-RELATED PROTEIN | 14 | 374 | - | - | |
| Chy03g01417 | 396 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 255 | 353 | - | - | |
| Chy03g01417 | 396 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 56 | 166 | - | - | |
| Chy03g01417 | 396 | Pfam | EamA-like transporter family | 211 | 349 | IPR000620 | GO:0016020|GO:0016021 | |
| Chy03g01417 | 396 | Pfam | EamA-like transporter family | 26 | 163 | IPR000620 | GO:0016020|GO:0016021 | |
| Chy03g01417 | 396 | PANTHER | WAT1-RELATED PROTEIN | 14 | 374 | IPR030184 | GO:0016021|GO:0022857 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Chy03g01417 | Chy04g00454 | CCT | |
| Chy03g01417 | Chy04g00454 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy03g01417 | Chy-Chr3:16911876 | Chy04g01678 | Chy-Chr4:23148707 | 7.08E-81 | dispersed | |
| Chy02g02335 | Chy-Chr2:27304367 | Chy03g01417 | Chy-Chr3:16911876 | 2.96E-141 | transposed | |
| Chy05g01017 | Chy-Chr5:14813206 | Chy03g01417 | Chy-Chr3:16911876 | 2.12E-68 | transposed | |
| Chy06g02058 | Chy-Chr6:24761629 | Chy03g01417 | Chy-Chr3:16911876 | 7.88E-40 | transposed | |
| Chy07g00601 | Chy-Chr7:5355064 | Chy03g01417 | Chy-Chr3:16911876 | 2.99E-74 | transposed | |
| Chy09g01349 | Chy-Chr9:15340262 | Chy03g01417 | Chy-Chr3:16911876 | 4.53E-70 | transposed | |
| Chy12g00374 | Chy-Chr12:4388597 | Chy03g01417 | Chy-Chr3:16911876 | 8.06E-61 | transposed | |
| Chy03g01417 | Chy-Chr3:16911876 | Chy04g00454 | Chy-Chr4:4141187 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy03g01417 | - | - | csv:101210562 | 778.859 |